RNA id: XM_021615327.2


Basic Information

Item Value
RNA id XM_021615327.2
length 3177
RNA type mRNA
GC content 0.55
exon number 12
gene id taf6l
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27480038 ~ 27487523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAATTTGGCATCAAacaagtctctctggataagcaCATCTAAATGAAAATGTAATGTACATTTATAATTGCATTGGCTCACGCATCTATCAAGACTAGTATAGGACTTACAATGACTATTTGGGCAATTCAAACAGACTGCTTGATTCGAAAATGTGTTTTTAGGCGCCGTATGGATGATGGGACGCAATTGCGGCGCCCCGGGATACGCCAAATTGAGCTCATTATTGCTGTGCGCCTCTATTTTTGTAAAGTGGATGGCTCTGTATTGATAGGATAATACAAGACCTCCTGTCAACCAAACGCACCCACCTCTTGataacttccttcacaacagcgcTGCTCAGCGGCGCGTAAGAAGtgtgaatgccctgacttctgcagagtcCACATCACCCTTAATACTGCACAGCCAATGCAGACCTAGCCctgcgtcgttagggtttggcaggggtaCAGTCCAGTTGGTGGAGGTAATACATTAAAATTGGCTGCCAACCgccataatttaaaaaaaaaaaaaatccacagaAGAATTAAGTAGCGGTTGTGGGAGTGACGCACATTTGAGTGACATCGAATTGGACCAATCTTTGGAAGGCTGGCTTTCCGGAAAATGTCGGCGCACCCGAGTGAGGTTCCTGTGTGCGGTTTAGAGCAATAACCTTGCAAATTCATACTGTCCAGTTGGTCTCGCTCCTCAGATCTGCGGGTCTACCGGGACGCTGCCGTGAGCATGGAGGAGAGGCGCTTCGCGGAAGTCCCCAGAGAGTCTGTCAAACTCATGGCTGAGAGTGCGGGAGTAGAACTCAGCGACGATGTGGCTGCATTGTTGGCTGAAGATGTCTGCTACCGGCTTAGGGAAGCCACACAGAGCAGCTCTCAGTTCATGAGACATGCCAAGAGGAGGAAGCTGACAGTAGAGGACTTCAACAGAGCACTGCGCTGGAGCAATGTGGAGGCCATAGCTGGCTACGGTGCGCAAGATGCCCTACCTTTCCGACCGATCAAGGAGGGCGAGCTATTCTTTGTGGATGACCGTGATGTCAACCTGGTTGAACTTGCCCTGGCCACCAACATACCCAAGGGCTGTGCAGAGACCATGGTGCGAGTGAACGTGTCTTATCTGGATGGGAAAGGCAACCTGGAGCCTCAAGGTACAGTTCCCAGTGCTGTACAAACTCTCTCTGAGGATCTGCTCAAGTACTACCAGCAGATCACCCGGGCCATACTAGGAGAGGACCCACACCTTATGAAGGTGGCTTTGCTGGATCTCCAGTCCAACTCCAAGATTGCTGCCCTCCTGCCATATTTTGTATATGTCATCAGTGGGGTGAAGTCTGTGAGCCACGACCTGGAGCAGCTGAACCGTCTGCTGCACATGGTGAAGAGTCTGGTGCAGAACCCCTACCTGTACCTCGGCTCCTACGTGCGTAGCCTGGTGTCCAGCGTCATGTACTGCATCCTGGAGCCGCTGGCCGCCTCCATCAACCCCCTCAACGACCACTGGACCTTAAGGGACTACGCAGCACTTCTGCTCAGCCACATCTTCTGGACCCATGGAGACCTGGTCAGTGGTCTGTACCATCAGATTCTGCTGTCTCTGCAGAAGGTTCTGTCAGACCCGGTCCGCCCACTTTGTTCTCACTATGGAGCTGTCGTGGGGCTACACGCACTCGGGTGGAAGGCTGTTGAGCGGGTGTTATATCCACACCTGCCAGCCTACTGGGCTAACCTGCAAGCTGTCCTGGATGATTACTCCGTCTCCAACGCCCAGGTGAAAGCAGACGGACACAAGGTCTACGGAGCCATCCTGGTGGCGGTGGAGCGCCTGCTGAAGATGAAagccctgtctctgtcccagccAGCGGAGGGGAGCAGCAGCGCCCAGCCGGGCTCTGGGGGCGTGATGGGTTTCAGGGTGAGTTCCCCCGGGCTCAGCCCCCCTCCAGAGCCCCTCTCCGAGGCCGCCCTGGGCATCGCCAGCCACCTGCAGGGACCTGGGGGGGCTGGCACCCCCTGGGATGACTGGACCCCCGTCCCCCTGCCCGCCATGTACTGTGAGCTCTACTCCTTCTTCGGCGACAGCCTGGCGGTACGCTTCAGCACGGGCCCCAGCTTGGGAGGTTGCCCCCCGTCAGCCCCCTCCCAGCCCCCTGATACGAGGAAGGAGCCCCCTGGTCCCGCTGCTAACCCAGACACCACGCGCAAGATGCCTCAGCTCACTGCTAACCTCAACATCAGCCCCCGGCAAGACGGGAGCCCTCGCACTGAGCCCGCCCCACCTAGTCTAGCTGCCACTGCTCCAGGAAGgTCCCTGGCTcgctcttcctcctcatcctccatccAGCGCAGAAACTCCTCCTCCCGGCCGGGACAGCGCTCAGCGGGTCCATCCCGCGACGTGTTCACCAAGGCCCGTTTCCCCCCTCCTCAGACCGGACCCCCCACATTCTCCTTCCTCATCGGGGGACGTCAGATGGGCCGGCGCTGCCAGGGTCGCCGCTTCCAGACCAGCTTCAGCTCTCCCCCACCCCTGTCCACCGTACCGCCCCGTGCCTACGCCCACAAGCTGCCCGTCATCGGGAGGGTTGGCAAACCGGTGCGCCGCTGGACCTGCTCCCACTACTCCCTGCACCTgcccctctgagagagagagaaaagtgagacTATGGTTGGGGGTCAAGGCCTTGGAACAGGCTGAGGCTACCTCACTGCTCAGTAGTGCAGGTGGAGTTCCCTATATCCTCCCTCCCTATTCGGCCTATGACATAAGAGGTAGACTAGGACTAGAGGATAGGCACATTAGGTGGGAGGGACCCTACAGGAGTCGCATAAGAGACACTGACTCATGTACACATTGTTCTAGAGCTCCGATTTTCCAACCTGaaaatcactgacgtcatgatttgacctcattTGTtcttgagttcccagttgtcttgaatgcaccatAAGGACACTACTAGTTTGACAACTTCAGACTAATGGGCCTGGGGTGTGTTGAATAGTGGAATCCATGGATATGGAAGGAGTATTCGCACCGAGCTGAGAGCTTGACACCGTCTTAACACATGGACAATGTATTTTCTACCATGTACCTGAGTAATTTTACCAACCAGTACATGTATATGGACGATAGCCAATATCCTAAAATAAATATTCTTACAATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896319 lncRNA upstream 78330 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 79760 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 82408 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 95057 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 102570 27376152 ~ 27377469 (+) True G787002
TU896413 lncRNA downstream 13867 27501379 ~ 27506375 (+) True G787069
TU896452 lncRNA downstream 90311 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 96951 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 133465 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 216503 27704015 ~ 27704232 (+) True G788583
XM_021615325.2 mRNA upstream 8604 27439042 ~ 27471435 (+) False LOC110531858
XM_021615326.2 mRNA upstream 8604 27439049 ~ 27471435 (+) True LOC110531858
XM_036987732.1 mRNA upstream 41275 27407641 ~ 27438764 (+) False LOC110531857
XM_036987737.1 mRNA downstream 136 27487648 ~ 27490438 (+) True kcnk7
XM_036987744.1 mRNA downstream 6953 27494465 ~ 27561525 (+) False LOC110531861
XM_036987745.1 mRNA downstream 6953 27494465 ~ 27561525 (+) False LOC110531861
XM_036987748.1 mRNA downstream 6955 27494467 ~ 27561525 (+) False LOC110531861
XM_036987738.1 mRNA downstream 6970 27494482 ~ 27561525 (+) False LOC110531861
TU896328 other upstream 100375 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1066507 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1521172 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1737130 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1933072 25545231 ~ 25546967 (+) True G786091
TU899899 other downstream 1852469 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1852935 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2795163 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2795163 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 4108484 31595996 ~ 31596918 (+) True G793757

Expression Profile