RNA id: XM_036987737.1


Basic Information

Item Value
RNA id XM_036987737.1
length 2462
RNA type mRNA
GC content 0.46
exon number 2
gene id kcnk7
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27487648 ~ 27490438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTGTGTTTTAAATATTTAAAACAAGTGGCTCACCTGCGTCTGAGTGTTTGGTTACCTCCACTAGCGATACACAGCAAGGTCAGTCCGACAAACAACCATGGTCTGTTGGGTCGACTCGTCCCAGAGGTTCTGTCGGAAGCATGCCTTCTGGTTCCTGCTCCTCAGCTACGTCCTCTTCACACTCTTTGGGGGTCTGGTGCTCATGGCTATTGAGCAGCCCCAGGAAAACAAGCTCAGAGCACAGGTCCTTGAACTCCGAGGGAACTTTCTGAGGGACAACTACTGCGCACCGGAGAGCAGGCTGGATACAATTATCGTGAAAGCGTCCTTTTCTGCTAATCGAAACATTGCTGTCTTAGATGCACACAGAGATGATTGGAGCTGGGATTTTATCTCGTCCATGTTCTTTGTGATCAATGTTTTGACTGTCCGTGGTTATGGTAACTCCAGTCTCCTTTCTGATGACGGCAAACTTTTCTGCATCTTCTACTGCCTGCTGGGAATCCCCCTCACCCTTTATGTCCTCTCCTGCCTGTCTGACCTCATGCTGCCCATCCTTACCCACGGCCCTGTGCGCCACCTCCAGACCTACTGGGGCCTGCCCTACGGCCGGGCAGTGCTGCTCCATGCCAGCCTCTTCTCTCTGGTCCTGGTGATACTCTTGTTCCTGCTGCCCGCTACCAGCCTCTGCTACCTGGAGCCAGAGTGGAGCTTCCTGGAGACCCTGTTCTTCTGCGTGGTCACCCTCAGCACCATCGGCCAGGGGGACTATCTACTGGGGAAAAGGCGCAACAAGGCGACCAAGGAGTGCATGGAATTCCTCACCTCCTGTGAGAGTAGCCATAGcagagttggggtcaattcaatttagacttttctttttttttttgcagttgaTTTCAGAATTGGCAGTAATCAAGatggaaatggaattgaccctaaTCCTGCCTGGTCCTCCACACAGGCTTCTGCTTCCCCTCTTGTCCTCATAGCTTTGTGATAATCGGATGTATCCGTCTCATATGTCTaccgtttttttttcttctccacagGTTATTTAATGGCTGGCATCGTGGCGATTCTGACTTTCCAGGAGACTGCCACGGAGGTGCCACAGGTCCAAGCAGTGTTCCGGCTGTTCTGTGGACCCCAGGACAGAGAAGTGAAGGGAACAGATGGGGATGAGATGGTGCTCAGTGAAGAGGACTCTGGACCCAGAGGAGCTCCAGTACACTCTCCCTGACTCAATCGCCCCCTGTCCTCTGGAACCGCCTGCACCCCTGTCTCCTGACCAGCCGAATCCCCATGATCCTGACCCCCAACCTATCCTATGGTAGCCAGAACACTGTTCCTAACTCCCACCGTTAGCATTCAAAGACGTTGAAATAGATGGGTGAGTGATTTGACTATGTTGCTAAAATTCTTCGTCTTGGGGACTGTAAAAGTTATTTGAATTTGACCTCTAGTCTACATGTTAGCTGCTTACAggaatactttgggattttggaaaTGTATCTACTTCCCTCGAGTCCGACGAGCTCGTGGACACCAGTTTGAAGAAAGTTGCTGGCTAGCACAATTGCTAGTTACTAGTgctagcgcaatgactggaagtctattggtatctgctagcatggcTTCCAGCCATTGCACTAATGcgagttagcattggcttgcgaaACTACTTCTAACTTCCTCCATACtggacagagacataaaaattgtgtccacgagttcatctgactctggggaagtagataaagggctaattgccaaaatcccgaagtatccctttgaGGTCATTGTTGAtttgtaaataaaataatatatttatattgcGTAGATGGTATTGATTTTAGACTTCCTATAATAATGAAAATCAGGTGAtgaggtatttaaaaaaaaaaaaaagattgtaaACCCCTGAGAGAAGGGTTGAGTTTGTGTATTCTGGTTATTTGAATTGTACAATacagtttagtgtgttttttGCGAAGATGAAAAGTGATTGTAATATCTGAGAAGCCAGACAGTCTTAAGTACTAATAACAGACATCTGCATCTGCAGGGCCAGTTGTTCTATCTTTTGTCATACAGACCCATTTAGGGAAGGCGTCTTGAGAAACAAAGCGTTCCCATTTCTCCCACTCCATACCATGACTTAACATGAAAATCATTTTATGACGTATTCCAAAAACAATTGTTAGTATCGAAGTCCTACACTTTCCTATTACAAGTGTTTGTCAACTAAATGACTTGCCACACAGTCAGTCCCTGATGAATGTAATGGCTTAAGACTGTCATGATCATGAATGCACTAAACATGTGAGGCAATTTTTTTTCCTGTGTCGTTTTTACCCACTCTTATACTGGGCATGCtctgtacatgtttttttttttggttgcACCTTTCACTGAATAAAATCGTAAATGTACCATATCTTGTGAGTAGAGTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896319 lncRNA upstream 85939 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 87369 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 90017 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 102666 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 110179 27376152 ~ 27377469 (+) True G787002
TU896413 lncRNA downstream 10941 27501379 ~ 27506375 (+) True G787069
TU896452 lncRNA downstream 87385 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 94025 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 130539 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 213577 27704015 ~ 27704232 (+) True G788583
XM_021615328.2 mRNA upstream 136 27480038 ~ 27487512 (+) False taf6l
XM_021615327.2 mRNA upstream 136 27480039 ~ 27487512 (+) False taf6l
XM_021615325.2 mRNA upstream 16213 27439042 ~ 27471435 (+) False LOC110531858
XM_021615326.2 mRNA upstream 16213 27439049 ~ 27471435 (+) True LOC110531858
XM_036987732.1 mRNA upstream 48884 27407641 ~ 27438764 (+) False LOC110531857
XM_036987744.1 mRNA downstream 4027 27494465 ~ 27561525 (+) False LOC110531861
XM_036987745.1 mRNA downstream 4027 27494465 ~ 27561525 (+) False LOC110531861
XM_036987748.1 mRNA downstream 4029 27494467 ~ 27561525 (+) False LOC110531861
XM_036987738.1 mRNA downstream 4044 27494482 ~ 27561525 (+) False LOC110531861
XM_036987740.1 mRNA downstream 4044 27494482 ~ 27561525 (+) False LOC110531861
TU896363 other upstream 125 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 107984 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1074116 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1528781 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1744739 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1849543 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1850009 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2792237 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2792237 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 4105558 31595996 ~ 31596918 (+) True G793757

Expression Profile