RNA id: XM_036987748.1


Basic Information

Item Value
RNA id XM_036987748.1
length 5976
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC110531861
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27494465 ~ 27561525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGGACATGTGAACACcagtcagactgttgaacagtgaGTGAACATTGACGGTCTTTCTTTCGCAGCAAACGCAAGTGTTGCGGCAACAGACTGGTGTTTCCCCAAGCAGTGAGGGCAGAGGGGAACTGTGGAGAGGATTGAAACCAATGTCCCTTGAGAAAATAACATTATAGTCTCCAAACATGACTTCAGTTTGGAAGAGACTTCAGCGTGTCGGCAAGAAAGCCTCGAAATTCCAGTTTGCGGCGACTTTTCAAGAACTGACGGTAGAATGCACGAAGAAATGGCAACCAGACAAACTGAGAGTGGTATGGACCAGGAGAAACAGACGAAACTGCACCAAGCTGCATGGATGGCAGCCGGGCATCAAGAACCCCTACAGGGGCACGGTGGTATGGCAGGTGCCCGAAAACCTGGACATCAATGTCACACTTTTCAAGGAGCCGACTGCAGACGAATTTGAAGACAAGGACTGGACGTTCATCATTGAGAATGAGACTAACAAGGGCCACAAGAAGGTGCTGGCATCGGTGGACGTCAACATGAAGAAGTTTGCCAGCGCCACGCCTGCCCAGTATGACCTGACGCTGAAGCTCAAGCCTCTGTCGGTGAAGGTGGTGGAGGCCACGCTCAAACTGACCTTGACCTGCGTCTTCCTCAAAGAGGGCAAGGCCACAGATGAGGACATGCAGAGTCTGGCCAGTCTGATGAGCCTGAAGCAGAGTGACATCGGCAACCTGGATGACTTCAACGATAGTGACGAGGAAGAGGGCGGAAGAAGAGCCAGCATCGGAGCTAGCATGGGAGCCGCAACTCCCGTCACAGCCTCCACAAGAAGAATACGTGATCAGGCATGGAGACCTGTGATTGACCCAGAGGCCACAGCTGCCAGTAAGATGGATTGGAGTAGCTCATCTGGCACTGTGTCTACCATCTCACTTCTGTCACGCCCCCCTCTGCCCGTACCCCTCGACCCCTCCGCCCTGCCTCCCGCCCCTGCCGCCCACTCCCGACTCACCACTGGCCCTGCGGGCACCGCTCAGCAGCCACGACCCTCCCCCTATGCCTACCAAGTGCCAGCCTTTGTCCGCGCCCACCCACCTGCACTGCCCAAAATCTTCCAGCCCGCTGCTGGCTCAGTGCCCATATCTGTAGGCCGGAGGCCCTGTGGCTTCCAGACTGACCCGGCCCTTGACCCTGCCAGTCTTGCTGAGGGCCGTGTGGCCCCTggtctccccaccttctctccatCAAGACCCCTCTCAGCCTCCTTCACTGGGCCTTCCTCcacttccacctctcctctctcctcttcaccctctgCCCCATCTGTCTTTccacctccctctttctctgataTTCCACAGACAGccACCTATGCTGCTGCTCGCACCAGTGCTTGGAGACCCCAGAGCGTCCCttccttctcatcctcctccttctcttccaccACTATCGGCACCTCCCCTCCTACTTCCCAGCCCCTTCCTGTCCCCTGTCGGCCCAAAGCATACATCACCTCCCTGGCAGAGCCGGGCTCTGCCCTCACTAGGCCTACCAGCCTGCCCTCAGCCCCTGAGACAGTACCCTGGCAGAGTGAATGGAGACCGCCCAAATCCCAGGCCCCTCTGGCCCAGCCAGCCCTCTCCCCCAAATTTCTGCACCCCTCTCCCCCTGACCCAGTGGAGCCTGTGACCCTAGAGCAGACAAAGCGGACCATGGAGACACCATGTAATCCTGCTTTCTCTCAGCTTGATTCCTACATGTCATTCTCCCTTGATGTGTCCCACTCTTCCATGTTGCAGTCTCCGCTCCCCTTACCTCCCCCTGTGCTAGCCTCATCTCctgcatcctcctctcttcccaccCCTGATTACGCATCTGACCCAATTGGAGCACCTTACCGCACTCTTGTGTCCTCATCCCCCCCCCTCGTAACCTCTGGCTCTGATGTTCCTGTCCTCACCCCTGCTTCTGCGCTGGCCATCGTCTCTGATTCTTCCTCATCCACTCCTATTGATGTTAACCCTACTCCCATTACCTCTGATGACCCAGCCCTTGCCCCAACCGCCACCCCTGACCCTTCCCTATCCTCTACCCCTGATCTTTCCTCTGATCCCACTGTTCCCACCCCTGGGCTTCTTACTGCGTCCGACTACACCGCTGCCCAATGTTATGACCCTGCTCCTGGTCCCTCCCCTCATGCTATCGGCGCTTCTCCGTGTGATGCAGATCCTGCTTCTGCCACTGTCTCCCAGTCAGTCCCCCCTGCTGCGCTCCAGACTGCAGAATGGATGCACCAGGTGGTTCCCACCATGGTCCACCCCAATTTGAAGAGGCTGGTCTCCCCTCCTCTGGAGTTCCCCCACACACCCTCTCTTCTCACCCCCTATCCTGTTCCTTCTCCTGTGCTCTCTGCTGGCTCTCAGACTCAAGTCCGCACTGCCCCCCTCCCAGCACCAGTCACTACTCCCCAAGAGATAGAGTTTCAGAGGCAGTTGAGCACTCTGACAGAGGAAGAATACACCACTGCCACAACTCCCACCCGCACTGCTGGAATGATCAGTATTGCCAATCAGAGGCCAGACCCATCAACATCCTCACTTGACCCATTGGCTAAGCCCTTTGAGACAAGAGCTTATGCGAGAAGATGGGGCGCAGACTCAATGTTTGGAATGGAGGTTGTCCAGGGAACGGCAGGGCAGCAGGAGGCAGCAGAGGAGCCAACAACGCCTGAACGCAGACCTGCAAACTCTCAGGAAATGGGTCAAGACAGTGCTGCTTCTCCAGAAGGCCTCATGGCCAGTCCTGGCCTGGTCACTTCCAGCCAGTCACTACTGGAGTGGTGTCAGGAGGCCACCAAAGAACACAAGGGGGTCAAGATCACTAACTTCAGCACATCCTGGAGGAACGGCCTGGCCTTCTGTGCCCTTCTACACCACTTCCACCCGGACAGGATAAACTTTGAGATGCTGGACCCTTATGACATCAAGCGCAACAACAAGAAGGCTTTCGACGGCTTTGCTGAGCTGGGCATTTCTCGGCTGATGGAGCCCTCAGACATGGCCCTCCTGGCCGTCCCTGACCGCCTCATCGTCATGACCTACCTCAACCAGATCCGCACCTACTTCTTGGGCCAGGAGCTGAGCGTGCTGCACATAGAGGCGGACAGCAGGGAGTCCAGCTACGGCGTGGCCGGGGAGAGCAGGGAGGGCCCCGACCCGGAGGCCGCTGCACGCTACTGTCAACGGATCCAAGATGAGACCCTCACAATGAACACCAATGGGGGCGCTGCAGAGAAGGAGGCGTATAGTGACACTAAGGGGGGCACCAATGGGGACGTGGTCCCGCCCCCTAGAACCAAACGGCTACAGGCTGCAGGGGCAGGAGGAGGGGCCCAGGCCCCCGTCGCACCCCCCAGGACACACTTCTTATCTGCCAAGTCTGGGTTCTCCCAGCTAAAGGATGCAGATCTGGTTAAGAAGCGGCGGTCGCAACGCAGGTCAATAGACGAGGCAGACACACCCGGGGTTGCTACAGGTCAGGAAGAGGGTGGAGCTACCAGAAGGAAATCAGAAACAGAATGGGAAGCTGGTGAAGAAGGACGACCGGCTGAGGAGGGGTGCCAGGACGCCAGCCAGTATGCACTGAGTGAGATGAAGGCCCTGGAGACGGAACAGAAGCACATTGACAGCAGGGCAGACATAGTGGAAAGGAGACTACGCCGACTGATGGAGTCAGGTAGTGACAAGATGCAGGAGGAGAAGCTGATTCAGGAGTGGTTCACTCTGGTCAACAAGAAGAACGCCCTCATCAGGAGACAAGACCAACTGCAGCTACTACAAGAAGAGCAGAACCTGGAAACGAGGTTTGAGATGCTGAACCGAGAACTGAGAGACATGATGGCTATTGAAGAGTGGCAGAAGACAGCGGCCCATAAGCACAGGGAGCAGCTGCTACTGCAGGAGCTGGTGTCTCTGGTCAACCTGAGGGACGAGCTGGTCCACGACATGGATGccaaggagagaggGGCTctggaggaggatgagaggctgGAGAGAGGCCTGGAGCAGAGACGCAGGAAGTACAGCAAGAAAAGCAAGGAGGAGAAGTGTGTGCTGCAGTGAGGCCTGGCGCCGGACACACCTGAACCAGGCAGCCCTGTGGAAGGTCACCTGGGTGCACTTTGGGACTGATGCTGTATGTGTGTGGCTCATGACATCAGCACAGCATGGAAGAGATTGAGAACAGTGTTATGTGACTGCACTAAGAGGACGGAAAACGTCCCTCCCCCCACACCCCTCCATGATATGACTGAGCCTCAATCCAACCTATGACTGGTTATCATCAGTCGCTTTGCCCTTTCAGATTGTGTTTTGATTGGATTGAAGTGTTTTTCTTGTCGCGTCATTTTCTATATGGATGCAGAgtttgtgtgtacctgtgtttgtgcgtgcgaaTGTGTGCCGCTGATGCGTGTCATTGTGAGTGCAATCTATTTTGTGTATTAACGTCGGGTCACAAAGACATATCCCTAACTAACCTATCACCAGATAGTTGCCTTACTGTAGAATCTGTTACAGTAGTGTATTGTTTCATGGGTTACATATAGAAGGTGTTTTCCACTGAATGGCATATTGTGGACGGGACAGGGCTCCAGTTACTATGTATAACAAAGACCAACTTTAGGCCCATGCAGCAGGTGGATTGATTCACCCGTCTTCACCTACAGTTACATGAAGCTGACAGGAGCGGTCTGTGATTTATTGCCAATTACAATGGAGAGATGGACGGGAAGTACTCAACTTGTGCCAAACaaatattgcaaaaaaaaaaaaaggatcttTCTTATTTCTTGCAGTGTGTTGGCTTGCCCTGTGCAGACGGCACACAGCAAACATCTGTTGTCTTGATTGTTTATCGACGTCGAGGAAAGAAGAAAACGGACATTGTCGACAAGGTCTTGGTATTGAAGATGTTAAATGTTTAACCAGAGTGGGAGATTGTAGGGAGGAAAGGGAAAAGAACTGTGGAGTCTATACGGTAGCAAGTTTCGTACCCTACAGCTCGGTGTCTGAAAGAACAAAACCGTTTTAACTTATCCAAAATAATTTATGGTTTTATTTATTGAATCGGTATTCAACAGATAATCTTACAGATCCAGCCTGTCAAATGTGCCTTTTGACCAGACCCatagttttaaaaaaatgacTGGAAGTAGGAACTTTGTTCCAGGTCTGGATATGTTTATGCAGTGAGTTTGAGTTCAGTTACTGTTTTGTGACATTAGCCTTGTAATgtcttgtttccattgattgggttttgttgttttattaattCAATGAATTGACGCAGAAGCTGTGGAGTCTGAAAATGAAATGATCTAAAAATACTAGAGAACAGCAATATTCAGAACATAAAACATCAGGCAAATGCATGTTTTGTAGTATTACTATATATAGTCTTATGCACGTTGTTATGACAGAGGATGTAATGTGCAAAAGTGTATGCAGTAAACAATTAACCCTAACACGGTctaaaaaaaaatacactttaCTTTTGCAGAAAAATATTCTAAGATTAAAACACCAGCACTTCCTTACAACAGTATTACGATCATTTGGCCAAGATTGGACCAGAGGTTGATATTAGCTTGACCTCTGTGGCGCAACACAACAGAGTAAAAACTAGACTCTGTCCTGAGTGATTTTGGGATGCCATTTGACTGAGAGTGAAAAAAAAATTGACGGTGAAGTGTTTGAACTTGTGTTCCAGTCTGTGCCTCCTCTACCACCCTGCTGTTAGTTACTGTGGTAATGTTTACTATTCCCTGTGTGAGTTTGAGAAATGTGCTTTTGAGTTTTCTGAAATAGCTttttggggattttttttgtttgttttaatgtTACGTACATTTGCACTATTTGTAATGTTTGGAAAATAAAAGCTATTTTGGATGACTCGGAGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896319 lncRNA upstream 92758 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 94188 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 96836 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 109485 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 116998 27376152 ~ 27377469 (+) True G787002
TU896452 lncRNA downstream 16298 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 22938 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 59452 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 142490 27704015 ~ 27704232 (+) True G788583
TU897996 lncRNA downstream 146786 27708311 ~ 27708510 (+) True G788588
XM_036987737.1 mRNA upstream 4029 27487648 ~ 27490438 (+) True kcnk7
XM_021615328.2 mRNA upstream 6955 27480038 ~ 27487512 (+) False taf6l
XM_021615327.2 mRNA upstream 6955 27480039 ~ 27487512 (+) False taf6l
XM_021615325.2 mRNA upstream 23032 27439042 ~ 27471435 (+) False LOC110531858
XR_002474915.2 mRNA downstream 13916 27575441 ~ 27578315 (+) False LOC110533009
XM_021615332.2 mRNA downstream 27429 27588954 ~ 27599597 (+) True LOC110531863
XM_021615335.2 mRNA downstream 72111 27633636 ~ 27647365 (+) True LOC110531865
trnaa-ugc-34 mRNA downstream 96956 27658481 ~ 27658556 (+) True trnaa-ugc-34
XM_021615336.2 mRNA downstream 207111 27768636 ~ 27772723 (+) False LOC110531867
TU896363 other upstream 6944 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 114803 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1080935 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1535600 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1751558 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1778456 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1778922 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2721150 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2721150 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 4034471 31595996 ~ 31596918 (+) True G793757

Expression Profile