RNA id: TU896452


Basic Information

Item Value
RNA id TU896452
length 458
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110533009
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27575441 ~ 27578315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtttagtctaatcttgattattgtccagccgTTGTGGTCCAGTGcagcaaggaaagacctagttaagctgcagctagcccagaacagagtggcacattttgctcttcattgtaatcagagggctgatataaatactatgcatgccagtctctcttggctaagtgTTTAGGATTGACTGACTGCAttacttcttctttttataagaaacaatgtgttgaaaatctGAAATAGTTTTCATAGTCAactcacacacagctctgacacacacacttatcctaccagacatgccaccaggggtctttttacAGTcctcaaatccagaacaaattcaagaaagcgtacagtattatatagagcccttattgcatggaacttccttccatctcatattgctcgaATAAACAGCAACCCTGGTTTAAAAAACCcccagataaagcaacacctcatgacacaacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896413 lncRNA upstream 71448 27501379 ~ 27506375 (+) True G787069
TU896319 lncRNA upstream 176114 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 177544 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 180192 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 192841 27384716 ~ 27384982 (+) True G787027
TU896453 lncRNA downstream 6183 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 42697 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 125735 27704015 ~ 27704232 (+) True G788583
TU897996 lncRNA downstream 130031 27708311 ~ 27708510 (+) True G788588
TU898004 lncRNA downstream 136225 27714505 ~ 27714714 (+) True G788596
XM_036987744.1 mRNA upstream 16298 27494465 ~ 27561525 (+) False LOC110531861
XM_036987745.1 mRNA upstream 16298 27494465 ~ 27561525 (+) False LOC110531861
XM_036987748.1 mRNA upstream 16298 27494467 ~ 27561525 (+) False LOC110531861
XM_036987738.1 mRNA upstream 16298 27494482 ~ 27561525 (+) False LOC110531861
XM_036987740.1 mRNA upstream 16298 27494482 ~ 27561525 (+) False LOC110531861
XM_021615332.2 mRNA downstream 10674 27588954 ~ 27599597 (+) True LOC110531863
XM_021615335.2 mRNA downstream 55356 27633636 ~ 27647365 (+) True LOC110531865
trnaa-ugc-34 mRNA downstream 80201 27658481 ~ 27658556 (+) True trnaa-ugc-34
XM_021615336.2 mRNA downstream 190356 27768636 ~ 27772723 (+) False LOC110531867
XM_036987751.1 mRNA downstream 417599 27995879 ~ 28160254 (+) False ank2b
TU896363 other upstream 90300 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 198159 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1164291 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1618956 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1834914 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1761701 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1762167 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2704395 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2704395 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 4017716 31595996 ~ 31596918 (+) True G793757

Expression Profile