RNA id: XM_021615332.2


Basic Information

Item Value
RNA id XM_021615332.2
length 5450
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110531863
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27588954 ~ 27599597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATGTCACTGCCGCACCTGCGCAGCCATCTTGTACTTTGAGCGAAGAGCggacacagaaagaaagaaaagaagaaaATAAACCTGTCAAATCAGACGAAAATAGGAATGTCTGTAAACGTTATATAGCCTCGTAACGATTAGACAGCCAAGAAGGACAAGGGGAGTTAGAAAATACGGTGAAAGACATCCAAGTGCCTTGGATATTGAGACCGACAATCCATATTTGCCTGTGAAagcggagtgagagagaggaggaaggaacaTTGAAATCGCCGATAGAAACATATCCCGAACGTCAGTCAAATCATGAATCCAGAATATGACTACCTGTTCAAGCTCCTCCTTATTGGTGACTCCGGTGTGGGAAAGTCCTGTCTTCTGCTCCGGTTTGCTGATGACACCTACACGGAGAGCTACATCAGCACCATCGGCGTAGACTTCAAGATCCGCACCATCGAGCTGGACGGCAAGACCATCAAACTGCAGATTTGGGACACTGCTGGTCAGGAGAGGTTCCGCACCATCACCTCCAGTTACTACAGGGGCGCCCACGGCATCATCGTGGTCTACGATGTCACAGATCAGGAGTCCTACAACAACGTGAAGCAGTGGCTGCAGGAGATCGACCGCTACGCGAGCGAGAACGTCAACAAGCTGTTGGTGGGGAACAAGTGTGACCTCACCACCAAGAAAGTGGTGGACTACACAACAGCCAAGGAGTTTGCCGACTCCCTGGCCATCCCATTCCTGGAGACCAGTGCCAAGAACGCCACCAACGTGGAGCAGGCCTTCATGACCATGGCTGCTGAGATTAAGAAGAGGATGGGACCCGGGGCCACGGCCGGCGGGGACAAGCCCAACCTGAAGATAGACAGCACCCCGGTTAGGCAGTCTGGCGGGGGATGCTGTTAAACCGGACCCGGTTCTGGATGCTCACCACCTCCTCCCGTCCCTCTCTGCCCGGGGcttcacctcctccacctctccctccactcttcaCCCCTCAGCCTCCCTTCCATCTACCTTTGTCTTACCCTACAGAGAACCAATGGGAACAGGGTTAAGTGAGGGATgggtggtcagggagaggttgagagaaagggatggaggggaggagttgAAGGGCTAGAACTGCGGACTGACTTAAACTATCTCCCCTAAAAAAGCGAATGGGGAAAAATAGTTAGGTAGGTAGGGGTGAGGGGGGgtttgaggatttttttttttttcatttttgctGAGTGATGAGGCAGGAAGGTAAACAGATATGAGAAAAGATTGGTATTGATTTAGAGGGGAACTGGGTGATAGAAGATTAGGTTTTAGATTCTGGCGAGCGCTtatcgctcacacacacacacacacacacacactgaaagtgGATCGGAGTGATTCTCCCATTCGAGATAGTCACAGGTATGGGTCTCTCTTTCCTTCAGGTTATGTCTTTCATTGCAACCCAGTGAAAGTCATATAGCAAAATTAAGTTTAGTGTGCTACAGTAGTCATCTGTCTATTGGGCCTATTTTATATGTTGGGGGGCCTTGTAGTCATCTTAAGTCTGTCTACAGCATAGATTGAGTCACGGACACCGTCTGGTCCACGTTTTATGGCTCAAATGCAATAGTAACACTCATGTATTCATGACTATCCAACCATTATACAAACTGAATTGGCATTGGAGCAGAAAGCAGACAGTTGTGTGCCACTACCAGCGTACTAACATTCTAGTGAGGCAGTGGTGAGTCATCGATGTTATTAAATGATGGGGATGCCCATTTGTTGTGCTTTCCCCCAAGCACCTCTAATCGTTCTCTTTTTCTGCCTGAAGTGAATGAAGGCATCAGCAGACGGGGGAGAGACTCATACACTGCAGTCTGTGTGAAGAGGGTATTCTGGGGGTGGTGGGACTTCTCATAGACCGCGTGCTTTAGGTTGATTTGACACTCCATGCAGATCATGAGAGCTTTTGGTCAAACTTGGAATCactccattccctctccctccatccctccacatgCAGAATGGAGGATgtagtgagagaaagggagagcgcaAGACATTTCTTTTCAGTTCTGTAGTATATGGTGTTAGTTAGCCCACATCACTCCTGTTAGGATTTCACATattgaagaataaaaaaataacacataAATATGTGAGATACGCTTAGGTCATGTTTGTATGTCTTTAAGTCGTCATGACactatatattacattataaatcagccctgaatgctgatttgctGACAACTGTGGAGAATCAGACCGTCTGCCACGGGTGTGACAAAACATttctttttactgctctaattacgttggtatcCAGTTTTATAATAGCAAtgaggcacctctggggtttgcgacatggccaatataccacggctaagggctgtgtccagggaCTCTGCGTTGCGtcttgcctaagaacagccctcgcggtggtatattggccatataccacaacccctcgggccttattgcttaaatatacccaAGTGGTTCTTCAACAtacacagacagtacacacacacacagataacggGGCATGACATACTGTAGTACTAGGTTAGGGGCGGGCGTAGATAGGGGCTTGGGCAATGCAACTGATATTCAACAACGATTTAATACACATTACTCTTGACACCACACATTGGCAATATCCTACATTCTGTGTTCATCTTAATAGATTATTATTCATATTGTTTCATAGGTATTATTACaatgattttattttatatttcttTTTGCTTGAAATGCTGTCAAACTTACGTTATTGGGTGGGTGGGTCGGTTGGGATGTTTTTTGGTTGTTGCTAAGTTTGACCGGGTCGGGGGAGTTTGTCTAAGAAAGCTACTGTTCCCTCCTGTGCCTTACTGGTCTCTTAAAGATACTGACCGCATGCTTAACTTGTGTAGCATGTCACAGTCGCACCACAGGTTCTCTTTGCCTTGGCCATGACCGACTTCTCAGACCGTGtttccacccccctctctgtcgTCACGTGTCCCACAGTGCATTTCCTTTATGGTTGTCACGGTTTCATGTCAGTTAGTGTGGTTGTTAAGAAGCGTAGCCAGTGCGTCACGGTTTAAATGGCCCAAGATGTCCTGACCTAGCTAATTATGTTCAAGTGGAGTCCCTACTCAGACCGAAGTCTCAATACTGTACTATGACCACATGTCAACTCATTACCTCAGAAGCGCTCTCTTTAGATCATTGCGTGAATAGTGTTCTTCATTGTCAACTGCTGGTTCCTGTAGCCTCTATATAGCCTAAGACATTAAGTGTTCGGCGAGTCAGAATGTGTGTTAATGGTTCCGGCTGTCCTGATCTCCCCCTCCTACAGTATCCTCGCCTGCGCCGTTCCCTTCCCAGTCTGTCCGCATGGTTCTCATGGCAGTGTGTTATTTTTCAGCGCCATTCCTATGGAACTATGGGTCCTTGCAGGGATGTGGAGAAAACCCTTCAACCCCTGACCTTAACCAACACTGGTGGTTTTTAATTGAATGCGCTGCAGTAGAGTGAACAAGGCCTCTAAGCGTTTGTGTTCTAGGCAACAAAGGCAATTGGCATTCGTTGATTATTACAACCTCAGTTTTCAACCCTTTTCTTTTACAAGACCGTTTACGACTGTAGAAGTAGGCACGGTTACAATCGGACTTTGGGAAGATCTATTCTCTGCCTTTGGTGGGAATTAGGGTGACATGCTGAGAACCCGGACTAGACCTGGAAAGTGATATTCCTTTTGTCTTTATGGTTTTCCCTTGTCTTGGTCTTGACAGTCTGAAATCatccagttgtgtgtgtgtgtaacagttcTAATCTTGTACCTGTATGGCTTTATAGCTATGTAAAGTGTAGACAGAGGTTCTTACTTTTACGACAACTATATAAGCATGTTATGGTCATGCTATTTGGTCATTGGGTTTGATCGTGTTACGTCATCATGGTTACGTTCCTAGAGCATGGTCGCGGTCCTAGGTTCTGGTTCATTGGGTTGAAGTGTTCGACTCTGTGCTTGAGCGTTCGGGGTTAAGAGGGACTGACTGGTCTTGCCATGCAGACCGGATATGAACTCCCATCAACCTCCTCTTAATTATTCAAACTCAACGAATCCAACGATGTTCTTTGTGACCCGGTTCGAACTACTCATCATTGATAACGGAATCTCGCTTGGACTTTGGGAGCATTCCTGGTGTTCCCGGGTTGGTCTTCGAGAGAGACTTGAAATTCCTCAGCACTTAAGGTGGCACGGCCTTGTCCTCCGGGCTCAGAACTCCAGGTAGTGAGTATGCTATGCATTCCCCATGCAATTGCAAAGTGCAGTTTCAGCCTCTACAAACTGCGATATCCAATTAATACCGATGAGTTAGTGAGCTCTTGCTGTCCGCAGCATATGGCTACCAAACCAGTCAATGGCATTCATGTCTAGAAGAGTGATGTTAGGGCAGAATGCAGAATCTGATTAAGTGTGAACAGCAGGTTTAGATAAGTTGTGACTCTTTTTATATGTAGGGTAGTAGATACAGTAGCCTTAGCCCTTGTATTTTTAGAAGAGCCCTTACAGATAGGGTGGGAAAACTAGGCTAAACCCCGTGACACAATGCAAGACTCAACCGGACTGGATTGTGCTGGCTCATTTTATGCTTAGGCAGTTTGGTGTGATGAATTTGAGAATCTGGTAGTAATCAGCTGACTGTCACTGGTAGGAAGGGAGGGATCAGTAGTAAGGAGGTGAGGGGTGggggctgtttgtgtgtgtaacatTCCTGCTCTCTGAACACAGGCTTGCTTTCTGGCTTTTCCCTCAAATCTTACATGAGCCCTTCTGCGAATGAAACGATTGTTTGAAACTCCACAAACAAGACGCACGCACACTTGGTCACACGGACATGCTAAAATGGACATAAAATGGACATTTCACGCCGTAACAGCGTGAGTCTCCTTTTGATATGTTCTGAATGTGCTTTTTCCTTCCACGACGTCTTCATATTCTACTGATTTTAATATATGAATTGAAAATATACTGTGGTAATATTGTGTCGTCTGGTCTGTTCGAAAGATAAGAGGGAGGGGTTTAGGAAATGTGGGTGGGACAACACATGGGGTGTGGAGTTAGGGGCGGGCTCTGGTTTGGAGCTTGCTCGTGAATGTGATTATGACGGAACTAGAATCTTGCTAGAATCCCTAGAATGTTTTTCCATGTCATTGTCACACTACTTTGTTGCTCTTCCGTGGCTTAATAAAGGAACAACGCACTGGTCTTTTTAATACCGAGCATCGTGCAGGTCCTCTCCTGGTCGTCTGCACTTtttttttcccttttctgtttTTCGCTTGTCCACTTTGGTGCTCTGTCTCACTGCTGATTTTCATcgcgttttttttcttctgtacatattataaatatatatataataataataaaaaaagatcAATGTCAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896453 lncRNA upstream 4186 27584463 ~ 27584768 (+) True G787107
TU896452 lncRNA upstream 10674 27577823 ~ 27578280 (+) True LOC110533009
TU896413 lncRNA upstream 82579 27501379 ~ 27506375 (+) True G787069
TU896319 lncRNA upstream 187245 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 188675 27399783 ~ 27400279 (+) True G787016
TU896464 lncRNA downstream 21380 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 104418 27704015 ~ 27704232 (+) True G788583
TU897996 lncRNA downstream 108714 27708311 ~ 27708510 (+) True G788588
TU898004 lncRNA downstream 114908 27714505 ~ 27714714 (+) True G788596
TU898013 lncRNA downstream 119948 27719545 ~ 27719913 (+) True G788605
XR_002474915.2 mRNA upstream 10639 27575441 ~ 27578315 (+) False LOC110533009
XM_036987741.1 mRNA upstream 27429 27494482 ~ 27561525 (+) False LOC110531861
XM_021615335.2 mRNA downstream 34039 27633636 ~ 27647365 (+) True LOC110531865
trnaa-ugc-34 mRNA downstream 58884 27658481 ~ 27658556 (+) True trnaa-ugc-34
XM_021615336.2 mRNA downstream 169039 27768636 ~ 27772723 (+) False LOC110531867
XM_036987751.1 mRNA downstream 396282 27995879 ~ 28160254 (+) False ank2b
XM_036987750.1 mRNA downstream 436219 28035816 ~ 28160254 (+) False ank2b
TU896363 other upstream 101431 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 209290 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1175422 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1630087 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1846045 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1740384 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1740850 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2683078 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2683078 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3996399 31595996 ~ 31596918 (+) True G793757

Expression Profile