RNA id: XM_021615333.2


Basic Information

Item Value
RNA id XM_021615333.2
length 2097
RNA type mRNA
GC content 0.60
exon number 8
gene id LOC110531864
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27601045 ~ 27623830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATCCTGATCAACCGCAGAGAGGCAATAATGTGGGCGATGGCGTGTCGGCGTTACTCCTGTGTTTTTTCCAAGGTAGAGCGCTAAAGAGAGATGGGCGTGACAACGGGCTGTCTGGACCACGAATAGTCTCCGGGAGGAAAGAGCATCTCGCAGTCTCCGATGTACCCGATGACAACGGAGAGGCAATGCCGACTGTCGGGTCCAATGGTTGTTCCATCCAACATACCTTCGCAGGTGGTGTTTTAACAACGGCACGACGTCCGATATTGAGGCCGCACGGGGATTGACACAATCCAAAAGGGAATAAAAAAATCTAACGGACCTCCTTCGGCACACATTAGCGGGTTGTGGCAGTGGGTTGATTAGAAAGTGCGTGGCAGAGAACAGctGTGAGCCCACATTGTGGCCGGCGGGCATGGTTTTGGAGGGTAGCTCGGAGGCCCTGTGTCCCCCGCCCTCACTGGAGCTGCGCCCGTCCTGCAACAAGAGCCAGCCCTCGCCTCCCCTGGGCTCATGCTCCACGCCCCACGACGGACTCTTCCCCGGGGACAAGGAGCCCGTCAAATACGGGGAGCTCATCGTCTTAGGGCACAATGGTTCCTTGGCCAATGGGGACAAGGGGCGAAGGAGAAGTCGCCTGGCCCTCTACAAGAGACCCAAAGCCAACGGGGTCAAACCTGATGTCATCCACAATGTCTCCACCCCTCTGGTGTCAAAGGCCCTCAGCAACAAAAGCCAGCACAGCATCTCTTACACCCTGTCCAGGAGTCACTCGGTCATTGTAGAGTACACTCATGACACCAACACAGACATGTTTCAGATCGGGCGTTCTACAGAGAGCATGATTGACTTTGTGGTGACGGACACAGCGGGCAGCAGCACCAGTGGTGGTGGCGGTGGGTGGCAGGTCCAGGGGGCGGCAGGCGAGGGggtcggaggaggaggaggggggcagtCGGCCCAGAGCACAATCTCCCGCTACGCGTGCCGCATAATGTGCGAGCGCAACGCCCCTTACACGGCCCGCATCTACGCCGCCGGCTTCGACTCCTCCAAAAACATCTTCCTGGGGGAGCGGGCTGCCAAATGGCGAACGTCAGACGGCTTGATGGACGGCCTGACCACCAATGGCGTGCTGGTGATGCACCCGGCGGGAGACTTTGTGTCGGAGCCGGCGCCAGGCGTGTGGCGGGAGATCTCGGTGTGCGGGAACGTCTTCGCCCTGCGGGAGACGCGCTCGGCCCAACAGAGGGGAAAATTGGTGGAGAACGAGTCCAACACCCTGCAGGACGGCTCTTTGATTGACCTGTGCGGTGCCACCCTCCTGTGGCGTACCCCGATGGGCCTGCGCCGCACCCCCACCCTCAAGCAGCTGGAGTCCCTCCGCCAGGAGCTGAATGCCGCCCGGCCCCAGTGCCCCGTGGGTTTTAACACCCTGGCCTTCCCCAGCCTGGCCCGGCGAGAGATTGTTGACAAGAAGCAGCCCTGGGTCTATGTCAACTGTGGTCACGTGCACGGCTACCACAACTGGGGCTACCGGAAAGACAAGGGCCACAACGTGGGCCCCGGGGGGACGGCTCCGGCGAGTACCGGGGAGAGGGAGTGCCCCATGTGCCGGCGCGTGGGCCCCTACGTGCCCCTGTGGCTTGGCTGCGAGGGCGGGCTGTACCTGGACGCTGGGCCACCGACGCACGCCTTCTGCCCCTGCGGCCACGTGTGCTCTGAAAAAACTGTGGCGGGCTGGAGCCAAATCCCGCTGCCGCACGGAACGCACGCCTTCCATGCCGCATGCCCCTTCTGCGGCACCTGGCTGACGGGCGAGCAGGGGCACATCAAACTCATCTTTCAGGGGCCCGTCGACTGAGGCCGGAGCTGAGTGGCTGAGATAAGGGGCAGGCTAGAGGGAAGGTGGACTGGGGAAATGTCTAAAAGGACTGTCTGTAAGGAAACGTGAAGGGACAAAAATAGCCAAGACTGTCGAAATGACGATGGCCTGAACCGAAGAAGAGAGGCAAACGTGATGGAAGTAGATGATGCATAAATGGCATTTGAGTTGTATTTGGGGAAGATGTAAATAAAAGGTGTTGAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU897919 lncRNA downstream 14241 27586540 ~ 27586804 (-) True G788511
TU897916 lncRNA downstream 19381 27581340 ~ 27581664 (-) True G788508
TU897908 lncRNA downstream 31260 27569474 ~ 27569785 (-) True G788500
TU897801 lncRNA downstream 39528 27559537 ~ 27561517 (-) True G788397
TU897809 lncRNA downstream 200835 27399307 ~ 27400210 (-) True G788405
TU897997 lncRNA upstream 84489 27708271 ~ 27708474 (-) True G788589
TU898010 lncRNA upstream 94374 27718156 ~ 27718491 (-) True G788602
TU898012 lncRNA upstream 95311 27719093 ~ 27719308 (-) True G788604
TU898014 lncRNA upstream 96054 27719836 ~ 27720080 (-) True G788606
TU898015 lncRNA upstream 96395 27720177 ~ 27720405 (-) True G788607
trnaa-ugc-33 mRNA downstream 116604 27484368 ~ 27484441 (-) True trnaa-ugc-33
XM_021615321.2 mRNA downstream 194360 27401836 ~ 27406685 (-) True ecsit
XM_036987728.1 mRNA downstream 196341 27401836 ~ 27404704 (-) False ecsit
XM_021615316.2 mRNA downstream 219560 27376523 ~ 27381485 (-) False LOC110531854
XM_021615310.2 mRNA downstream 264965 27327518 ~ 27336080 (-) True LOC110531851
NM_001124643.1 mRNA upstream 197792 27821574 ~ 27823317 (-) False LOC100136672
XM_021614367.2 mRNA upstream 197792 27821574 ~ 27834414 (-) False LOC100136672
NM_001124383.1 mRNA upstream 243566 27867348 ~ 27872371 (-) True chi
XM_021615338.2 mRNA upstream 270254 27894036 ~ 27896838 (-) True LOC110531868
XM_021615339.2 mRNA upstream 539886 28163668 ~ 28283460 (-) False camk2d1
TU897903 other downstream 37520 27563162 ~ 27563525 (-) True G788495
TU897812 other downstream 132723 27463292 ~ 27468322 (-) True G788408
TU897739 other downstream 219756 27380162 ~ 27381289 (-) True LOC110531854
TU897573 other downstream 664281 26936484 ~ 26936764 (-) True G788173
TU897572 other downstream 665539 26935127 ~ 26935506 (-) True G788172
TU898444 other upstream 198999 27822781 ~ 27834264 (-) True LOC100136672
TU898702 other upstream 521438 28145220 ~ 28146979 (-) True G789228
TU899399 other upstream 905038 28528820 ~ 28652471 (-) True G789863
TU899489 other upstream 1039669 28663451 ~ 28666058 (-) False G789945
TU900103 other upstream 1419654 29043436 ~ 29043807 (-) True LOC110531881

Expression Profile