RNA id: trnaa-ugc-34



Basic Information


Item Value
RNA id trnaa-ugc-34
length 76
RNA type mRNA
GC content 0.62
exon number 1
gene id trnaa-ugc-34
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27658481 ~ 27658556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtcccgtgtggctcagttggtagagcatggcgcttgcaacgccaaggctgtgggtttgattcccacgggggacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU896464 lncRNA upstream 34711 27620977 ~ 27623770 (+) True G787118
TU896453 lncRNA upstream 73713 27584463 ~ 27584768 (+) True G787107
TU896452 lncRNA upstream 80201 27577823 ~ 27578280 (+) True LOC110533009
TU896413 lncRNA upstream 152106 27501379 ~ 27506375 (+) True G787069
TU896319 lncRNA upstream 256772 27400367 ~ 27401709 (+) True G787013
TU897991 lncRNA downstream 45459 27704015 ~ 27704232 (+) True G788583
TU897996 lncRNA downstream 49755 27708311 ~ 27708510 (+) True G788588
TU898004 lncRNA downstream 55949 27714505 ~ 27714714 (+) True G788596
TU898013 lncRNA downstream 60989 27719545 ~ 27719913 (+) True G788605
TU898046 lncRNA downstream 82025 27740581 ~ 27740834 (+) True G788638
XM_021615335.2 mRNA upstream 11116 27633636 ~ 27647365 (+) True LOC110531865
XM_021615332.2 mRNA upstream 58884 27588954 ~ 27599597 (+) True LOC110531863
XR_002474915.2 mRNA upstream 80166 27575441 ~ 27578315 (+) False LOC110533009
XM_036987746.1 mRNA upstream 96956 27494482 ~ 27561525 (+) False LOC110531861
XM_021615336.2 mRNA downstream 110080 27768636 ~ 27772723 (+) False LOC110531867
XM_036987751.1 mRNA downstream 337323 27995879 ~ 28160254 (+) False ank2b
XM_036987750.1 mRNA downstream 377260 28035816 ~ 28160254 (+) False ank2b
XM_036987755.1 mRNA downstream 395063 28053619 ~ 28160254 (+) False ank2b
XM_036987756.1 mRNA downstream 395064 28053620 ~ 28160254 (+) False ank2b
TU896363 other upstream 170958 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 278817 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1244949 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1699614 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1915572 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1681425 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1681891 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2624119 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2624119 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3937440 31595996 ~ 31596918 (+) True G793757