RNA id: XM_036987754.1


Basic Information

Item Value
RNA id XM_036987754.1
length 6544
RNA type mRNA
GC content 0.55
exon number 43
gene id ank2b
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27995879 ~ 28163412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAGGGGGACAAGGAAAGCTGGCGAGGCTGACAGGCAGAGTGGGTTTGCTGGGCAAAAGGTAGCATCTTAGCCCACCTGTGGATGTAGCCTCTAGCTGTTAGCGCTCTAGGGGTGGATGGGGGAAAAAAGATACAAGGACTGGATTTTTCTTGTGGATTTACTAGAGCAACTTTACCTGCTTTTGTAGGTTTGTTTACATTTGATGACGCCTGGCTTCGCAGACACTGGGATTGTGACTAGCGGTTGCCATGGGCAACGCAGCAATGTGTAAGGTGTGTGAGGCTGAAAAGGGTTTGAAAGCCAATGGGAGTCAACCCAAGATGGACCACATTCTACCAGAGTCAGACTACTACTGCTTTGAACAACATCCTGAGCCTGAGCCAGAACCCCAAATACTGTCGGACAGCAACACCAGCTTCTTACGAGCGGCAAGGGCGGGGAACATCGACAAGGTTCTGGAGTACCTGAAGGGGGGAGTGGACATAGGCACCTGTAATCAGAATGGGCTCAACGCGTTGCACCTGGCAGCTAAGGAGGGCCACGTGGAGCTGGTCCAGGAGCTGCTGGAGAGAGGCTCAGCTGTGGACTCGGCCACCAAGAAAGGGAACACAGCCCTCCACATTGCCTCTCTGGCCGGACAGGCCGAGGTGGTGAAGATACTGGTGAAGCGCGGCGCAGAAATCAACTCTCAGTCTCAGAATGGCTTCACCCCTCTGTACATGGCTGCTCAGGAGAACCATATGGACGTGGTGCGTTACCTACTGGAGAATGGAGGTAACCAGAGCACCGCTACAGAGGATGGCTTCACCCCACTGGCCATCGCGCTGCAGCAGGGCCACAACCAGGTGGTGTCTGTCCTGCTGGAGAACGACACCAAGGGCAAGGTGCGGCTGCCCGCCCTGCACATCGCCGCCCGCAAGGACGACACCAAGTCTGCCGCGCTGCTCCTCCAGAACGACCACAACGCCGACGTGCAGTCCAAGAGTGGATTCACGCCACTTCATATTGCTGCCCACTATGGAAACGTGAACGTGGCCACACTACTGCTAAATCGTGGGGCGGCTGTGGACTTTACAGCTAGGAATGGGATCACGCCCCTCCACGTGGCCTCTAAGCGTGGCAACGCTAACATGGTGCGCCTCCTACTGGACAGGGGGTCTCAGATCGACGCCAAGACTAGAGACGGCCTCACACCTCTACACTGCGCGGCCAGGAGTGGACATGACCCTGCAGTGGAGCTACTGCTGGAGAGAGGAGCACCCATGCTGGCCAGgaccaagaacggtctgtctcctctccacatGTCAGCTCAAGGCGACCATGTTGAGTGCGTCAAGCACCTGCTGCAGCACAAGGCGCCTGTTGATGATGTCACACTGGACTACTTGACGGCGCTGCACGTCGCCGCCCACTGCGGTCACTACAGAGTCACCAAGCTGCTGCTGGACAAGAGGGCAAACCCCAACGCTAGAGCACTGaaTGGCTTCACCCCACTGCACATCGCCTGTAAGAAGAACAGAGTGAAGGTGATGGAGCTGCTGGTCAAGTATGGAGCTTTCATCCAGGCCATCACAGAGTCTGGCCTGACTCCCATCCACGTTGCAGCCTTCATGGGTCACCTCAACATTGTCCTGCTGCTGCTACAGAACGGCGCCTCGCCTGACGTCTGCAACATTcGCGGGGAGACGGCCCTACACATGGCAGCCAGGGCAGGACAGGTGGAGGCGGTGCGCTGCCTGCTGAGGAACGGCGCCCTGGTGGACGCCAGAGCCAGGGAGGACCAGACTCCCCTCCACATCGCGTCTCGCCTGGGGAAGACTGAGATAGTCCAGCTGCTACTGCAGCATATGGCCCACCCTGACGCCTCCACGACTAACGGATACACACCCTTACACATCTCAGCCAGGGAGGGACAGGTGGACGTGGCTTCAGTGCTGCTGGAGGCGGGCGCCTCACACTCGCTGGCTACCAAGAAAGGATTCACTCCGCTGCATGTGGCGTCCAAGTACGGAAGCCTGGATGTGACCAAACTTCTTCTGCAGAAAAGAGCCCCTCCCGATTCTGCTGGGAAGAATGGCCTCACGCCTCTCCATGTCGCTGCGCATTACGATAACCAGAAGGTGGCGCTCCTGCTTTTGGACAAAGGGGCCTCCCCCCACGCCACGGCCAAGaatGGCTACACTCCCCTCCACATTGCGGCGAAGAAGAACCAGATGGACATAGCGGTGGTGCTGCTGCAGTACGGGGCCGAGACCAACATCCTGACCAAGCAGGGGGTCACCCCCCTACATCTGGCCTCACAGGAGGGACACGCTGACATGGCCGCCCTGCTCATGGAGAAGGGGACTCAAGTCAACGTCCCCACCAAGAGTGGCCTCACCCCACTCCATCTGGCTGCCCAGGAGGACAAGGTGGCTGTGGGTGAGATACTGGCTAAACATGGAGCCAACCTGGACCAGCAAACTAAGTTGGGTTACACTCCTCTGATCGTAGCGTGTCACTATGGCAATGCCAAGATGGTCAACTTCCTCTTACAGAATGGTGCTAGTGTCAATGCCAAAACCAAGAATGGATACACTCCCCTCCACCAAGCAGCACAGCAAggaaacacacacatcatcaATCTACTGCTGCAGAATGGAGCTAAGCCCAACAACATCACTGCGAATGGTAACACAGCTCTGGCCATCGCCCGGCGACTTGGCTACATCTCGGTGGTGGACACACTCAAGGTTGTCACCGAGGAGATCATTACCTCGACAACCACGGTGACAGAGAAACACAAGTTGAACGTCCCTGAGACAATGACTGAAGTCCTAGATGTCTCTGATGAGGAGGgtgACGACACGATGACAGGGGACGGAGGGGAGTACTTGAGGGCAGAGGACCTGAGGGAACTGGGAGATGACTCCTTGCCTGGACAGTACATGGATGGGATGAACTACCTGCGCTTCAGTCTGGAGGGGGGACGCTCTGACAGttTGGACAGGTCCTACACTCCCAGTCACCACGGTTACTACTCTCCAAAACACGAAAGCATGATAGAGGAGATGCTCGCCAGCCACAACGTATCGTCTCTTGCCAGGGAAAATGAAAAGGACTCGTATCGTCTGAGCTGGGGCACAGAAAATCTGGACAATGTGGCACTGTCCTCCAGCCCCATCCACTCTGGCTTCCTGGTTAGCTTCATGGTGGATGCCAGGGGAGGAGCCATGCGGGGTTGCCGTCACAACGGCCTGCGCATCATTATCCCGCCGCGGAAGTGCAGCGCGCCCACGCGGGTGACCTGCCGCCTGGTGAAGAGGCACCGCCTGGCCACCATGCCCCCCATGGTGGAAGGAGAGGGCCTGGCCAGCAGGCTGATCGAGGTGGGGCCCGTCGGAGCCCAGTTCCTCGGGCCTGTAGTCGTGGAGATCCCTCACTTCGCTGCcctgagggggaaggagagggagctgGTGATCATGAGgagtgagacaggagagagctGGAAGGAGCACCACTGTGAACACACCGAAGAGGAGCTCAACCAGATCCTCAACGGCATGGACGAGGaaCTGGACCCTCCAGAGGAGCTGGAGAAGAAGCGTATCTGCCGCATCATCACCAGGGACTTCCCCCAGTACTTTGCGGTGGTGTCCCGGGTCAAACAGGACAGTAACCTGATCGGTCCAGACGGGGGCATCCTCAGCAGCACGGTGGTGCCTACGGTCCAGGCAGTCTTCCCAGAGGGAGCCCTCACCAAGAGGATCAAAGTGGGACTACAGGCTCAGCCAATGAACGTGGACGTGGTGAAGAAGCTCTTGGGGAACAAGGCTACATTCAGCCCCATCGTGACCCTGGAGCCCCGGAGGAGGAAGTTCCATAAACCCATAACCATGACCATCCCCATCCCCAAGAGTAACACTGACCCAGTGGTCAACGGCTTCGGAGGGGACCAGCCCACCCTGCGCCTGCTCTGTAGTATCACAGGTGGAACGACACCAGCCCAATGGGAGGACATTACAGGGACCACGCCCCTAACGTTCATCAACGACTGTGTCTCCTTCACGACCAACGTATCGGCCAGGTTCTGGCTGATAGACTGTCGGCAGGTGCAGGAGTCAGTAAACTTCTCCAGCTCGGTCTACAGGGAGATCATCTGTGTTCCGTACATGGCCAAGTTCGTCATCTTCGCCAAGACCCACGACCCCATTGAAGCGCGCCTCCGCTGCTTCTGTATGACTGACGACAAGATGGACAAGACCCTCGAGCAACAGGAGAACTTCACAGAGGTGGCCAGGAGCAGAGACGTAGAGGTCCTGGAGGGCAAACCCATCTATGCAGACTGCTTTGGCAATCTGGTCCCTCTCACCAAGAGTGGCCAGCACCATCTCTTCAGCTTCTTTGCCTTCAAAGAGAACAGGCTGGCACTCTTCATCAAGATCCGAGACAACACTCAGGATCCGTGTGGCCGTCTGTCCTTTATGAAAGAACCCAGGTCTTATAGAAGTCTGGCCCACAACGCCATATGCAACCTGAACATCACACTACCATCCTACTCAAAGATCAGCAGGAATCTCGAGAAATTAGATCCCCAGGATGAAGCCGAGAGAAAAGAGGAACGATTGGAAATAATAGCCGACCACCTGGGCTTCAGTTGGACGGAGCTGGCTCGAGAGCTGGAGTTCAGCGAGGAAAGGATCAATCTAATAAGGATTGAGAATCCGAACTCACTACAGGACCAAAGCCATGCCCTGCTGAAGCTCTGGACTGACAGGGATGGCAAACATGCTACAGAAACTACATTGATCAAACGACTCACCAAGATCAACAGGATGGACATTGTTCACCTCATCGAAACCAAGATAATCAAGTCCACCCAGCAGGACACATCGTCCCACACCTATGCGGAGATTGAGAGGACCATTGCACTGGATCACAGTGAAGGTTTTTCTGCCCTCCATGAGGACATAGACAGTCCCCGGCCAGGCAGGCGTACAGGCGGCACCCCCAGTGGGCCAGGGTCCAGGCAGGGGCCCTTCATGGTGTCAGAGGAGGACCTCTCCTCCAGCATGTCATCACTGCACGAGACGTCAGGGCGGGTGGAGACAGACACATCAGTAACAGGCCTCCTGAGACACGCCCAGAAGGAGAAGCTACAGAAAGAGGGCGAAACGACACATTCTGTGGGCGGTACATCACAGAGTGGATCAGACAAGGCTGAGTCACTACACATGGGCACTTTTAAACAAgcGGATGATCTGCCAGACATCCCTCCGCAAACAGTGACAGAGGAACAGTACATGGATGAGCATGGAAACCTGGTAGTCAAGAAGATCACGCGGAAGGTGATCCGTAAGTACTTCTCTCCAGACggcgtggagagagaggaggtgacgGTGGAGGGATCTCACCAGGAGATGGTCAGTGTGGAGGAAGGAGACGGCTTCTCCAAGGTAGTGAAGAGGACTGTGGTCCGGAGCGAGGGAGATCAGACCGAGTTGACCTTCTTGGAGCCCTTGGCCCTGGGGGCCACCACGGCCTCGGACTTCGAGTCAGAGCAGGTGCAGGGCCGAAAGGTCAGCAAGGTGGTCAAGACGACGGTGGTGAGGGGCGAGAGGATGGAGAAGCAGACGGGTGACTCAACGCTGGCCGCAGACCTCCCCTCGGCCAAGGAGGACTTTGAGAAGGCGTTGAGTTATGCTGGAGGCTTTGGAAAAATCCAACTTCCTCATTTAGTAGAGAAAGAGGTTGTGAAGGACGACGGTTCTGTGGTCAAAAGAACCCAGATGCGTAAGTCTCGTACCCAGAAGAGGACTGTGGTGAAAGACGCCCAGGGTAAGCATGTGCTCCTGGAGCGGCTGGACGACACCCCAGAGACCCTGCAACCCGATGCCCTTCGGCAACACCTGCACCTGCTGCTCCAACGCTATTGTgccaaggaggaggaggaaggagagaaagaggaggagaagagaaagaagaaGTGATGGACTGATTTGATTTGCTGGCTGAGTTGTTCTTCTTCCCTTTTGGCCCTGCCCCCCCCCCATGCTACATAAGCCCCCTATCCACAAAAAGCCTATGAAGTCTTGTAAGCTCACCCCTGATCTTTACCTTCCACACAGACATCTCCCGCTAAAGACACTGGATtgcgtttttgttttttttgttgtttttttccctttTGTGGCAAATAATGGAACactttttatttttgttatttgtgcTTTCACTTGTTTTGGGGTCGTTTTCCTTTTGACTTTTCCTGTTTTATTTGCTCATTTTGTGACCAAAGATAGTATCCCCTTGCTCGTCGGGTTACTTAGAATATTATTTGGTCGTTatcctttttttgggggggggggttcttctaGTTTTTGGCTGCTGTGGTACAATAAACGACTACGCAAACAAAATGcaacaaaaagaaaacaaaaagggaAAAGGAATAAAGAGGGGGCACCTCTGACATTCGCCTCATGCACAGGCATCTTCCTGAAGGAACGATTGTAAACTCTTGTAAATAAAGGAGAAGAAACATGCTCGGACTGGGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898164 lncRNA upstream 185853 27819854 ~ 27867779 (+) True G788753
TU898197 lncRNA upstream 221723 27831454 ~ 27831909 (+) True G788771
TU898109 lncRNA upstream 253895 27799196 ~ 27799737 (+) True G788701
TU898101 lncRNA upstream 264997 27788349 ~ 27788635 (+) True G788693
TU898096 lncRNA upstream 269358 27784067 ~ 27784274 (+) True G788688
TU898199 lncRNA downstream 16672 28176926 ~ 28178077 (+) True G788773
TU898188 lncRNA downstream 17844 28178098 ~ 28184335 (+) True G788762
TU898429 lncRNA downstream 124997 28285251 ~ 28285462 (+) True G788992
TU898767 lncRNA downstream 133470 28293724 ~ 28294024 (+) True G789292
TU898764 lncRNA downstream 134174 28294428 ~ 28295041 (+) True G789289
XM_021615336.2 mRNA upstream 280909 27768636 ~ 27772723 (+) False LOC110531867
trnaa-ugc-34 mRNA upstream 395076 27658481 ~ 27658556 (+) True trnaa-ugc-34
XM_021615335.2 mRNA upstream 406267 27633636 ~ 27647365 (+) True LOC110531865
XM_021615332.2 mRNA upstream 454035 27588954 ~ 27599597 (+) True LOC110531863
XR_002474915.2 mRNA upstream 475317 27575441 ~ 27578315 (+) False LOC110533009
XM_021615349.2 mRNA downstream 171552 28331806 ~ 28340457 (+) True LOC110531872
XM_036987768.1 mRNA downstream 288008 28448262 ~ 28548376 (+) False LOC110531876
XM_036987767.1 mRNA downstream 320899 28481153 ~ 28548376 (+) False LOC110531876
XM_036987766.1 mRNA downstream 320900 28481154 ~ 28548376 (+) False LOC110531876
XM_036987769.1 mRNA downstream 320901 28481155 ~ 28548376 (+) False LOC110531876
TU896363 other upstream 566109 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 673968 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1640100 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2094765 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2310723 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 1179727 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1180193 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2122421 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2122421 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3435742 31595996 ~ 31596918 (+) True G793757

Expression Profile