RNA id: XM_021615342.2


Basic Information

Item Value
RNA id XM_021615342.2
length 4318
RNA type mRNA
GC content 0.44
exon number 19
gene id camk2d1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28163668 ~ 28283460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttggaatgagatgttcgatggacaggtgtccacatacctttggtcatgtagtgtctaTAGGCCTCTGTACCCTCCGTGGGGGTCCGTGGTTACAGCTAGGGGGAGGCGTTGTACAGTGGTCACACAACCAGGAAGAGCTTGATAGAAAAAGTCTCGCAGCCTAAGTGAAGTGTCAGTAGCCAGGCACAGAGAACAGCAGGTCTCGACGTCCCTGACAACCCCTAAACTCGTGCCAATAACTATTATTGGATTCGGAAACGGAGCGGGAAGAGTAAATGTATTTGAATTTTAAAGCTTATTTTGTGAATTTGGTTTATCGTTTGAGCTAGAATATTGTCAATTTGAAACAGCAGAGAAACTCGAGTGGCTTTTGAGGTTTACAGTCCCAACCTACTAGAGACAGTCTTCCCTATCCTTTGCCATGGCTTCGACAACCTGTACCAGATTTACCGACGAGTATAATCTCTACGAAGAGCTGGGAAAGGGAGCTTTCTCCATAGTGAAAAGATGCATGAGGATCTCCAGCGGACAGGAGTATGCTGCCAAAATCATCAACACAAAGAAGCTATCTGCTCGGGATCACCAGAAGCTGGAGCGAGAGGCCAGGATTTGTCGCCTGCTCAAGCACCCCAATATCGTGAGGCTCCATGACAGCATATCAGAGGAGGGATTTCACTACCTGGTCTTTGACTTGGTGACTGGTGGGGAGCTGTTTGAGGACATCGTAGCCAGAGAGTACTACAGCGAAGCAGACGCCAGTCATTGCATTCAGCAGATCCTAGAGGCCGTGCTCCACTGCCACCAGATGGGCGTGGTCCACCGCGACCTGAAGCCTGAAAATCTGCTCCTAGCCAGTAAGCTGAAGGGCGCAGCGGTGAAGTTGGCAGACTTTGGTCTGGCCATCGAGGTGCAGGGAGACCAGCAGGCATGGTTCGGTTTTGCAGGAACCCCAGGCTACCTGTCCCCAGAGGTCCTGAGGAAAGACCCCTATGGGAAACCTGTGGATATGTGGGCCTGTGGTGTGATTCTCTACATTCTCCTGGTGGGCTACCCTCCCTTCTGGGACGAGGACCAGCACAGACTGTACCAGCAGATCAAGGCTGGGGCTTACGATTTTCCGTCCCCTGAGTGGGACACAGTGACCCCCGAGGCCAAAGACCTGATTAACAAGATGTTGACCATCAACCCTGTCAAGAGGGTCACCGCCACAGACGCACTCAAACACCCCTGGATCTGTCAACGCTCCACGGTGGCATCCATGATGCACAGACAGGAGACGGTGGAGTGCCTGAGGAAGTTCAACGCCAGAAGGAAACTCAAGGGTGCTATCCTCACCACCATGCTGGCCACACGCAACTTCTCAGCCAAGAGCCTGCTCAACAAGAAAGCTGACGGCGTCAAGGAGCCTCAAACCACTGTCATCCACAACCCAACTGATGGAAACAAAGTAGAGTCCAGTGAGAGTGCAAACACCACCATGGAGGATGAGGACGTGAAAGCTCGTAAGCAGGAGATCATCAAAGTGACTGAGCAGCTGATTGAGGCCATCAACAATGGAGACTTTGAAGCCTATACGAAGATCTGTGATCCCGGGCTTACATCCTTTGAGCCAGAGGCTTTGGGAAACCTATTGGAGGGAACCGACTTCCACAGATTCTACTTTGAGAACGCTCTGTCCAGGGGAAAGCAAGGGCCCGTCCACACCATCCTGCTCAACCCCCACGTGCACCTGATCGGCGACGACGCGGCGTGCATCGCTTACATCCGCCTCACCCAGTACATGGACGCCAGCGGCATGCCACGCACCATGCAGTCGGAGGAGACCCGCATCTGGCACCGCCGCGACGCCAAGTGGCAGAACATCCACTTCCACCGCTCCGGCTCGCCCACGGTGCCCGCCAAATAAATTGACTGGAGTTGAGGAGCCCCTAGCCTACAGCTGTCAGCTGACCTGCGGAATTTGCCTACTAAGTGTGTGACATCCTCTCCCAATCCCATCCCAACGCTACAACTTCGCCCTCTGAGTGTTGTTTACATATCGTCGCTGCTGGACTGAAGATTCTTCTTGTAAAATATAAAAAGGAAACAACAATCTTGACGATATAATTTTATAGAGAAAATGTTGGTGTTTTATCGCATTGTTCCATTCTTCTCAGTCTCATCGCAGGACATTTATGActgaaacatatatattttttattttaatacaataATTTCCTAATTTTAAACATGTTTTAAGTTTGAATGCCATAGGAAAATGAATAGAGTACATGCCAGAGTTGTTGACGATATGTGAAGTTTGCAAATTTGTGGGTTTATGAGATATATCTGAGAGATTTTCAATCTtaaataatatacagtaatacagtgtCGTCCGTAATTATTAGgacagtgaagcatttttttcttcttttgaaaTCGTGGCTGAAGTTTAGAGTGCAGACTGACAGCTTTAATTTGACGTTATGTTCATCCGTATCGGCTCAACCGTTtggaaattacagcactttttgtacacagTAGTcctccccattttaggggacaaagtattgagacaaattcacttaaatgtgtattaaagtagtaaaaactATGTGGTTtcatattcatagcacgcaatgactacattaagTTTGTGACtcacatttgttggatgcattttctgtttgttgtggttgtttcagattattttgtgcccaattagAAATGAagagtaaataatgtattgtgtcattttggagtcacttttatacGGATactcctgaatgaatcgtgaataatgatgagtgagaaagttagacgcacaaatatcataccaacacatgctaacctctcaccattacaataatagGGGGGGTTAGTATTTTGGGGGAGGGTATGATATTGTGTGTCTAACTTCCTTACTCATAAATATTAACGATTCATTTGAGATTATTCATAATCATAGTAGTCTCCACATGAGTGCAGAaaatccaaaatgacacaatacattatttaccatttaatttctattgggcacaaaataatctgtgtggggacacacacacacacacacacacacacacactactgtgtacaaaaagtgctgtaatttataAATGCTTCAGCCAATtaggatgaaaataccctcaaattaaagatgACTGTCTGCCCTTGAAGGTCACTTCGATTTCAGAgccaaaatgaagaaaaaaatgcTTCTGTCCCAGTAattacggagggcactctatacggCTTGGTTTTCCAATATTATCAGGGTCGGGGATATGCGGTGAACTGACAAACTCATGAGTGCATTCATATGATCTCAGTATTGCACATCGGTCCCAATGACAAAAGTGATATCCGTTAAGCTTTACAGGACAGTGACCAACATATCGCAGTTTGTcaacccttttttttttaaatgtcaggtTTTTTTGTGTAGAAATGGCTATAAAAATCTATGAGAACATAAGTGAACGTCAAAACACGAGCGTGCTTCTTGTGGTGATGTATAGACTCGTGATTGAGTGAATCGCTATAGCTTCGCTTAAACTCTTGAGTATTAAACTGTTTAAACATTAGCTTAGTTTACAAATCGGTTGACAATTCAAGTTCACTTGTTCTCAATTGGCTCAATATTAAGTATGATTGCTGGGAATTTCAATTGACAATTTATGTTAAGGGAAAAATGGTACCTATGTTTCGTTATGATATGCGTTTGGCTATACATCATCACGTGAGAACTGTGAAGTCTCAATGATGGAATGTAAAactatactgtagatataatgtCCACGTATATTACTCGAGGCCATTGTATGACATGGAACGGATGATAATGATATGGATGATAAATATGTGAATTTTATTGGTTATTTTTTCTCTTAATTTTATATTGTTGAATTGATAGGTTGTCCCTTCTTGGATTATTGTTGATCATTTCTTCCAGTCCTCGCATATCGGTGGAAcgattgaccccccccccccccccccccccccatggaagAAAATAAAGAGCCTTTTACTTACCCCTTTTACCACTgatgtgtccctgtgtgttaATTACTCTCTTTGACAAGTAGCAACACACATTGTTTTATACTGAGGAGAAGTGAGACTGTTCTCAAGTATGGAATCACATTGTTCTGTCAGTTTTCCTAGTTGGTAGAGATTTATTAAATGGGTTTGTTTGTTTTGCCAATGGATATGTAAGGGAATGACTTGTTAAGTTGAACTGCACTATGGGACACTGTGTATATTGTTGCTATGAGGGAAATGGACtgatgtttaaatgtttaaaaaactaactaataaaatgtgatttcttCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898580 lncRNA downstream 99073 27995891 ~ 28064595 (-) True G789131
TU898451 lncRNA downstream 331706 27827524 ~ 27831962 (-) False G789009
TU898448 lncRNA downstream 331706 27831446 ~ 27831962 (-) False G789009
TU898450 lncRNA downstream 331706 27831446 ~ 27831962 (-) True G789009
TU898147 lncRNA downstream 356506 27806958 ~ 27807162 (-) True G788738
TU898891 lncRNA upstream 31367 28314827 ~ 28315047 (-) True G789397
TU898897 lncRNA upstream 44399 28327859 ~ 28328172 (-) True G789403
TU898927 lncRNA upstream 96919 28380379 ~ 28381404 (-) True G789433
TU898930 lncRNA upstream 98396 28381856 ~ 28382430 (-) True G789435
TU898932 lncRNA upstream 99289 28382749 ~ 28383538 (-) True G789436
XM_021615338.2 mRNA downstream 266830 27894036 ~ 27896838 (-) True LOC110531868
NM_001124383.1 mRNA downstream 291297 27867348 ~ 27872371 (-) True chi
XM_021614367.2 mRNA downstream 329254 27821574 ~ 27834414 (-) False LOC100136672
NM_001124643.1 mRNA downstream 340351 27821574 ~ 27823317 (-) False LOC100136672
XM_021615334.2 mRNA downstream 539838 27601045 ~ 27623830 (-) True LOC110531864
XM_021615348.2 mRNA upstream 10715 28294175 ~ 28310607 (-) True LOC110531871
XM_036987764.1 mRNA upstream 58679 28342139 ~ 28408632 (-) False LOC110531873
XM_036987762.1 mRNA upstream 58679 28342139 ~ 28408633 (-) False LOC110531873
XM_036987763.1 mRNA upstream 58679 28342139 ~ 28408633 (-) False LOC110531873
XM_036987765.1 mRNA upstream 58679 28342139 ~ 28432006 (-) True LOC110531873
TU898702 other downstream 16689 28145220 ~ 28146979 (-) True G789228
TU898444 other downstream 329404 27822781 ~ 27834264 (-) True LOC100136672
TU897903 other downstream 600143 27563162 ~ 27563525 (-) True G788495
TU897812 other downstream 695346 27463292 ~ 27468322 (-) True G788408
TU897739 other downstream 782379 27380162 ~ 27381289 (-) True LOC110531854
TU899399 other upstream 245360 28528820 ~ 28652471 (-) True G789863
TU899489 other upstream 379991 28663451 ~ 28666058 (-) False G789945
TU900103 other upstream 759976 29043436 ~ 29043807 (-) True LOC110531881
TU900128 other upstream 765438 29048898 ~ 29049244 (-) True G790535
TU900144 other upstream 785392 29068852 ~ 29069187 (-) True G790551

Expression Profile