RNA id: XM_036987762.1


Basic Information

Item Value
RNA id XM_036987762.1
length 4663
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110531873
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28342139 ~ 28432006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGCAAAGGCAATGAGACTCTTGCAGAAGTCTACCCACAGGCGCTCACAATGTAGGAAGCGCTCGCTTGAAAACAGattaccaccacacacactgcttgCCAGTGACTGATATTATTTGCTTCCATTTTCGGAGTGTTGATGGTAATCTGATTAATTTGAGGAATTTTGGCTCTGAGCATGGAGGGCTGCTATCTCCCCGAATACGAAAGGATGGAAGCGTGGCTTGACGACCACTTGGAGTTCGCTCACTCCTACTTTGTCAGGAAGGCTACAAGGGAGATGGTGAATGCCTGGTTTGCTGAGCGAGTCCACTCCATCCAgccctcctcatcatcctcctcctcgtcatcctcCAAAGAAACCCTTACACCACAGAGACCCACCCAGCCCTCAGACAGTCCCTGCCTAGCCTTCTCCCTGCCGCCTTCCCTGGGCCTGAACGACGGGCGCTCTCCTTCCCCGTCCCCCAGCCCCGCTCCCAGCACCCCCACCCGCAAGATCTCTGCATCTGAGTTTGACAGGCCACTGAGGCCCATCGTGGTCAAGGACGCGGAAGGCTCACTAACCTTCCTCTGTGACGCCGAACCCGACCGAGGCGACATCCGGACGCCCATGCCCTTCAGAACCCAGCAGGGAGGGGTCGGGCTTGGCATCCCTGCAGGGATGATGGACGAGGTGGGCAGTGCCCGGGGGTTGGACCGCTGTGCCAGACTGTTGGAGTTGGTGAAGGATGTGTCGAGTCACTTGGACGTGACGGCTCTGTGCCACAAGATCTTTCTGCACATCAACGAGCTGATTGCTGCCGACCGCTACTCCCTCTTCCTGGTGGGCGAGGACAGCTCCAACAGGAAGTTCCTGGTGAGCAGGCTGTTTGATGTGGCCGAGGGCTCCACACTGGAGGAGGTGTCCAATAGCTGCATCCGCCTGGAGTGGAACAAGGGAATTGTGGGTCACGTGGCGGCCACGGGCCAGCCCCTCAACATCAAGAATGCTTACGAGGACCCCAGGTTCAATGCAGAGGTGGATCAGATTACAGGCTACAAGACCCAGAGCATCCTGTGTCTGCCCATCAAGAACCATAGAGAAGAGGTGGTAGGAGTGGCTCAGGCCATCAACAAGAAGTGTGGAGAGAACGGTACTTTCACTGAACAGGATGAAAAGGACTTCTCTGCCTACCTGGCCTTCTCCGGGATCGTCCTACACAACGCCCAGCTCTACGAGACGTCCCAGCTGGAAAACCGACGCAATCAGTGGAAGGTTTTGACGGCATTTCTCAACGTCCTCAGGAGATGGATAGACATGCAATTTCTGGAACAATCTCCCTGGCATATGCGaaagGTGCTGTTGGACCTGGCCAGTCTGATCTTGGAGGAGCAGCAGTCTCTCGAGGTGTTACTGAGGAAGATAGCAGGCACCATCCTCTCCTTTATGCAGGCCCAGGGCTGCACTGTCTTCATAGCTGATGGAGACTCTATGAACTCCTTCTCCAGCGTGTTTCACATGGAATACGAGGAGCTGGGAGAGGCCATAGACGTCCCCAAAAGGGACTGTGACGTGAGTCAGATAAACTACATGTATGCCCAGTACGTGAAGAACACCATGGAACCTCTGAACATCTCTGACGTCACCAAAGACCAACGCTTTCCCTGGATGAGTGAAAACCCAGAGCACCCCAGTAACCAGATCAAGAGTTTGCTCTGTACTCCTATCAGGAACGGGAAGAAGGATAAAGTGATAGGTGTGTGTCAGTTGGTGAACAAGATGGATGAGGCATCGGGGAAAGTGAAGTCCTTCAACCGAAACGATGAACAGTTCCTGGAGGCCTTCGCCATCTTCTGTGGACTGGGTATACAGAACACCCAGATGtatgaaacagtggagagagCCATGGCCAAACAGGAGGTCACATTGGAGGTCCTCTCGTATCacgcctctgctgcagaggaagaGACACGGGCGCTGCAGGTAACCGCGGCAGCCACTGTTCCGTCAGCCCAGTCTCTGCGCCTGATGGAGTTTAGCTTCAGTGACTTTGAGCTGTCCGACGCTGAGACCACTCAGGCCACCATACGCATGTTTGTAGACCTCAACCTGGTCCAGAACTTCCAGATGAAATACAAgagtctgTGCCAGTGGATCCTGAGCGTAAAGAAGAACTATAGGAAGAACGTGGCTTACCACAACTGGAGACACGCCTTCAACACCTCCCAGTGCATGTTCGCCCTGTTCAAATCTGGCCAGTTACAGagtaATATGAGTGAGCTGGAGATCCTGGCTTTGATGATCGCCACCCTGAGTCACGACCTGGACCACAGAGGAGTCAACAACTCCTACATACAAAGGAGTGACCACCCCCTGGCCCAGCTCTACTGCCACTCCACCATGGAGCACCACCACTTTGACCAGTGTCTCATGATCCTCAACAGcccagggAATCAGATTCTGAGCAGTCTGTCTCTGGATGAGTACAAGGCCACTCTGAAGATGATCGAGAGGGCTATTCTGGCAACGGACCTGGCTCTGTACATGAAgaggagaggagagttctTTGAGCTGACCAAGAACAGCCAGTTTGTCTGGGACGATGACTACCATAAAGACTTACTGAGGTCAATGCTGATGACCGCATGTGATATTTCTGCCATTACCAAGCCTTGGCCAATACAGAAGAGGATAGCCGAGCTAGTGGCTACAGAGTTCTTTGAGCAAGGGGACAAGGAGAGACAAGAACTCAACATTGAGCCAATAGATCTGATGAATCGGGAAAAGCGGGATAAGATTCCGAGCATGCAGGTATCGTTCATCGATGCCATCTGTACACAGTTGTATGAGACCCTGGCTGGTATGTCTGAGTCCTGTTCGCCACTACTCGAGGGCTGCCAGAAGAACAGGCAGAATTGGAAGATTCTGGCCGAACAGGGCGACAAAGGTTTCTTCAACGGAGTGGTGTAGAAGTGGTCAAcgtccctcctccatccccacaTTCACTCCATCCCTACACCACCCCCACCGCCGAGCAGACGACATCAACACTAAGCTATATTTATAACCATAGTCATTTTTTTTTCTTGCACAAAGTCCTCTCCCTACATGAAGGAAGTCTCACTACGGTATATCCCTGAGTCTGAGGAAGTGAAGTAGACTGAACAGGAGAGGTTTGCGTGTGCACGGCTACTATCGGGCCTACTGAGCTCCAAGGAATCAATACGACACCGTAgtactgtagacagacagacccggGTTCAAGCAGTATTTGCAATCTCTCAAATAACTTGAGCTATTCCATTGGTGCCACTGCACCAGGAGAGCGCCATTAAAGActacaaatactatttgaacccaggtcttagTACAGATACAACTTTACTTTCTACACACCGTACAGCACCACAGTAGGAAGCTTGTTTTGTAACACCAGGGTGCAGGCACACACCACAAAGGTTTTGAGAGAAcgtacatttttgttttgtaacATTGTCACTCGTTATAACTATTGCATAtttatgttttatatatttattcgTTTTCTATACTGTATCGTCAGTTTCGttttgagaacacacacacacacacacgtctttatAAAACAGTGTGTGTTTTATTACCAAACGATCCAAATGTCTCTGCTTTGAAAAGTTCACTCGACCATCCATTCATGTGTGTATTTCTAGGGGTTGTATTATTTTAACTTTGCAAATTGTAAAGGAGCCAAAGACTAGACACGTGGTCTAGAAGATTCCActgccttcctgtgacatgaTAGGTATGAGGTCCAATTTCACAAGAACCTACTTGTATGTAGACACTTGTTGGCCCTCATTATGGACCAGCCCAGCAGGTGGTCCTTTTTTAAAAACGTGTTGAATGTGAGGCTGGGGTGTCTCGTCGAAAGCAGAGCTTGACAGTCGGAAGCCCAAAATCAATTTGCAATATTGTCAGTCTACCTTGAGGTAATTTGTATTTATAGTGGAACATTTTAAAAATGGCATTatagaattgtttttatttttacatttcttCCAATACAGGGAATGACAGGACTGAATAACTACAAACTCTCTTTCAATCAGAAAATGACTCATCTTTCTCTAAACTTTCTGCCTCCAACATTTACACAATATACTATAGTACTTTTCAGGTAGAGAAATGTGAACTGCATCACTGTCATTCACAGGAGAAACTCATCCAAATGTTACTTAACCATGTCCTAACTTGCAGCACTTATCCGTATAGACGTGCGTGGTCACTCCGAGGACCACAGTTGTTATTGTGGTTGTATTTTGTACTTGAAGAAGTTTCCAGAAATAACATTGTTCCTGAATTTGtgcttaaaaaaaataatgtttttttttaaaaggatAGTTGCTTTTCTTTTTTCAATTCCACACAGCTTTGGTCTCGATTGGTATTTCTAGAAAAAGATGTGTTACTTCACCAATGATAGACCTGTGTGTTGCATGTGAAGTTACAGAATTCTATAAAAAGGTGGCTATGTGCAGTCACAGGACAGCAGCCCTGTGGGTTATTAGTGGAGGCTGAGGTAATACGACGTGTATCGCGGTTCCGTGTGAAGACAAAGGGGTTTCCCCGTCCTGCTCATCGACTCTGAAGAACACTGAGACAAGTTCAATGGTACATCCCATTAAAAGGATACTGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898897 lncRNA downstream 13967 28327859 ~ 28328172 (-) True G789403
TU898891 lncRNA downstream 27092 28314827 ~ 28315047 (-) True G789397
TU898743 lncRNA downstream 75889 28265788 ~ 28266250 (-) True G789268
TU898672 lncRNA downstream 119776 28163682 ~ 28222363 (-) True camk2d1
TU898664 lncRNA downstream 169572 28163682 ~ 28172567 (-) False camk2d1
TU899339 lncRNA upstream 46299 28454932 ~ 28552172 (-) False G789803
TU899392 lncRNA upstream 108403 28517036 ~ 28517566 (-) True G789856
TU899398 lncRNA upstream 128250 28536883 ~ 28537548 (-) True G789862
TU899331 lncRNA upstream 138805 28547438 ~ 28552172 (-) False G789803
TU899332 lncRNA upstream 139247 28547880 ~ 28552172 (-) False G789803
XM_021615348.2 mRNA downstream 31532 28294175 ~ 28310607 (-) True LOC110531871
XM_036987757.1 mRNA downstream 58679 28163668 ~ 28283460 (-) False camk2d1
XM_021615352.2 mRNA upstream 27908 28436541 ~ 28443621 (-) True LOC110531875
XM_036987780.1 mRNA upstream 258606 28667239 ~ 28993223 (-) False LOC110531879
XM_036987781.1 mRNA upstream 258606 28667239 ~ 28993223 (-) False LOC110531879
XM_036987783.1 mRNA upstream 258606 28667239 ~ 28993223 (-) False LOC110531879
XM_036987784.1 mRNA upstream 258606 28667239 ~ 28993223 (-) False LOC110531879
TU898702 other downstream 195160 28145220 ~ 28146979 (-) True G789228
TU898444 other downstream 507875 27822781 ~ 27834264 (-) True LOC100136672
TU897903 other downstream 778614 27563162 ~ 27563525 (-) True G788495
TU897812 other downstream 873817 27463292 ~ 27468322 (-) True G788408
TU897739 other downstream 960850 27380162 ~ 27381289 (-) True LOC110531854
TU899399 other upstream 120187 28528820 ~ 28652471 (-) True G789863
TU899489 other upstream 254818 28663451 ~ 28666058 (-) False G789945
TU900103 other upstream 634803 29043436 ~ 29043807 (-) True LOC110531881
TU900128 other upstream 640265 29048898 ~ 29049244 (-) True G790535
TU900144 other upstream 660219 29068852 ~ 29069187 (-) True G790551

Expression Profile