RNA id: XM_036987771.1


Basic Information

Item Value
RNA id XM_036987771.1
length 2854
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110531876
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28448262 ~ 28548376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGCCCTTTACAGAGGCACTGTCTGACATTCATTGTGCACTTGCTCAAGAGAACGTATGATATAACACTTCCGTTTTTATCAAGGTTATTGCAAATGAGATGAGTTGAATTAAATTACTCCACGTTTTATGCCGTTTTTATGATCAACTGGAAGACACCTCAGTCCACCGCACAAGAAGGCGCATCCATATTCCATAAGCACTCACGCATCTCTATGCTTCCAGTGGGCTGGTGCGGTAAACGCCCTGTGAGAGATTCCCGAGAGGCGGTGTCATTTTTTTTATTAGGACTGGAACTTCTAGAAGATTCTATTTATATTAGATAGCTGCAATAGCTCAACAAGAACTCAGCCCTCGTACCCGAGAGATGCTTTCGGGAATCGTATGACCTGCTGCCGCTCATCCCAAAGATAACCGACTGTTGACCGCAGCTTTCTCGCTCCTTTTCGAGCGTGCCGCACCGGACCCCGCGCGTTAGAAAACAAGACGTTTTGGAGGATGTACTACAACACCGCGCAACGGCAGGAAGAACTTGGATATTAGGATAAGAAACACCGCTCTTCGTTTTGTAAAAGGGTTTGACAGTTGAAAAAGGGACACTGACAGCGCGACAATGCCAGAAGAAAAAGTGTTTCATCAGCAGGGTGTCCACAGCCCTCTGGAGCAGGGGGTCAGCAGCAGCAGCTCCATCCCCTGTCAGAACTGTGGCAAGGCCTGCAAGGGAGAGGTGCTGCGCGTGCAGAACAAACACTTCCACATCAAGTGCTTCGTCTGCAAAGTGTGTGGCGTTGACCTGGCCCAAGGGGGGTTCTTTGTGCGCCAGGGGGAGTACATCTGCACCCTGGACTACCAGCGGATGTACGGCACGCGCTGCTTCAGCTGTGAGGAGTTCATCGAGGGAGAGGTGGTGTCGGCCCTGGGCAAAACCTACCACCCACGCTGCTTCGTCTGCGCCAGCTGCAaACAGCCGTTCCCTGCCGGTGACCGCGTGACGTTTAACGGTAAAGAGTGTATCTGCCAAAACTGTACAGAGCCCCTGCCTGCCAACAGCCCTGCTCCCATACAGGCTGTCCACAACTGCTGTGGCTGTGGGAAGGAGTTTAAGAACGAGCAGTCCCTGGTAGCGCTGGACAAACACTGGCACCTAGGCTGCTTCAAGTGTAAGGTGTGCAACAAGGTGCTCAACGCAGAGTACATCAGCAAgGATGGGATCCCTTACTGTGAGGTGGACTACCATGCCATGTACGGCATCCAGTGTGACAGCTGCAAGAAGTACATCACCGGCAAAGTACTGGAGGCTGGGGAGAAACACTACCACCCGTCATGTGCCCGCTGTGCCAGGTGTGAGCAGAtgtttggagagggagaggagatgtaCCTGCAAGgcaacTCTATCTGGCATCCTCcctgcagacaggcagccagacaggAGGAGAAGAGTAAGAAGCAGGTCCGGATACAGCTCAATGACGTCTCTGAGCGGCAGGTGACCAGGACCTCCTCTGAGAGCATCACCTCTGTCCCAGCCTCCAGTGCGTCTGGCTCTCCCAGCAGGGTCATCTACGCCAAACTAGGAGATGAGATGCTGGACTACAAGGACCTTGCTGCTCTGCCAAAAATCAAGGCGATCTACAACATCGACCGGCCAGACATGCTCTCCTACGCTCCTTATGTCAGCTACCCCTCAGAGGAACGACACTACGGAGATGGCGACGGAGAGAAGTCTCCCCGTCAGAGGAGGCCCTccagtcccagctccaacagCTCCCAGGGGAGGTATGGAGGGTACACCCCGTCCCGCTCCCCCCAGAACTACAGCAGGCCAGGTAGTGAAAGTGGTCGGAGTACACCCAGTTTGTCCACCTATTCCGACGGCAAATCTCCCTCCTCCACCTATGTGGCTGCTCCCAGGCATTTCCACGTACCAGAGACTAAGGTCAAGATAGATAATATCTATAGAAAACCCCCTATCTACAAGCAGCATGCCTCTAGAACATCCTGGCCAGAAGGGGACGACGTCAAGACAAGGACCAGTTGGATGATCTTGAAGAGTGAGATAGACGGCCAACCTCTCCCAGAGGAcctgctggaccccaggaagtccACCTGCAGCCTGCCCACTGACGCCTCCCTGCCCAGCTTCCCCTACAGCAAGTCTGCTTCCCTGCCAGGATATGGAAAAAATGGCATATACAAGGAGGTTGCCGACCATGCTGAGGATGAGCCAGACCAGCAGGACTCCCACAGCTGGGGAGGAATGAGAGAGTACAAGgtgtaCCCCTATGAGGTGCTGGCTGTGACTCACAGGGTGAGGGTGAAGCTACCCAGAGATGTGGACCGTACCAGACTGGAGAGACACCTCTCCCCAGAGGACTTCCAGCATGTGTTCGGGATGACCCTGGACCAGTTTGACCGCATGGCCCTGTGGAAGAAGAACGACATGAAAAAGAAGGCACGCCTTTTCTAAAGCCAAGTGACTGTAACAGGGATAAAAATAGCATCTCTAGTCTACAACGTCTGTCCAGTCTGGAAGAAAGGAaatcagaaagaaaaaaaacccCATCAGAAATCATCTATATATGCACCGCCATACGACGTTGCGCCTGCGAATCATCATCTCTGCCAGAATAAGGAAGATGGAGACATTTTCACGATGTCGCCGTGACCGACATCCAACGTCGAGGCAATGTTCGTCACATATAGCTTTTGTATGCGTTGTGGTCTGAATGTTATTTTTTATAACCTTTGGGGAGGTGGGGGGAGATGCATTTGCATGGCCCGTTGacaccactcctcctcttcccctctccccgcCTCGATGTGAGTTCTGcatccccctcccccttcctcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898979 lncRNA upstream 33825 28447127 ~ 28447334 (+) True G789481
TU898969 lncRNA upstream 43609 28436588 ~ 28437550 (+) False G789472
TU898970 lncRNA upstream 43762 28436588 ~ 28437397 (+) True G789472
TU898821 lncRNA upstream 97835 28381131 ~ 28383324 (+) True G789339
TU898803 lncRNA upstream 122979 28353967 ~ 28358180 (+) True G789323
TU898997 lncRNA downstream 118886 28667262 ~ 28670285 (+) True G789485
TU899150 lncRNA downstream 148317 28696693 ~ 28700897 (+) True G789629
TU899279 lncRNA downstream 375579 28923955 ~ 28996300 (+) True G789754
TU899723 lncRNA downstream 450203 28998579 ~ 28998779 (+) True G790159
TU899736 lncRNA downstream 466790 29015166 ~ 29020160 (+) True G790172
XM_021615349.2 mRNA upstream 140702 28331806 ~ 28340457 (+) True LOC110531872
XM_036987756.1 mRNA upstream 320905 28053620 ~ 28160254 (+) False ank2b
XM_036987777.1 mRNA downstream 5393 28553769 ~ 28663634 (+) False LOC110531878
XM_036987778.1 mRNA downstream 5407 28553783 ~ 28663634 (+) False LOC110531878
XM_036987776.1 mRNA downstream 55288 28603664 ~ 28663634 (+) False LOC110531878
XM_036987779.1 mRNA downstream 55293 28603669 ~ 28663634 (+) True LOC110531878
XR_005053221.1 mRNA downstream 344672 28893048 ~ 28894058 (+) True LOC118966022
TU896363 other upstream 993636 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1101495 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2067627 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2522292 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2738250 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 791605 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 792071 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1734299 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1734299 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3047620 31595996 ~ 31596918 (+) True G793757

Expression Profile