RNA id: XR_005053470.1


Basic Information

Item Value
RNA id XR_005053470.1
length 56
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC118966204
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28497217 ~ 28497272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttattaGCTCTTTTAGTATTTCTACAGTAGGTTTCCTCAAAGAGAAAGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU898979 lncRNA upstream 49883 28447127 ~ 28447334 (+) True G789481
TU898969 lncRNA upstream 59667 28436588 ~ 28437550 (+) False G789472
TU898970 lncRNA upstream 59820 28436588 ~ 28437397 (+) True G789472
TU898821 lncRNA upstream 113893 28381131 ~ 28383324 (+) True G789339
TU898803 lncRNA upstream 139037 28353967 ~ 28358180 (+) True G789323
TU899005 lncRNA downstream 34541 28531813 ~ 28539147 (+) True G789493
TU898997 lncRNA downstream 169990 28667262 ~ 28670285 (+) True G789485
TU899150 lncRNA downstream 199421 28696693 ~ 28700897 (+) True G789629
TU899279 lncRNA downstream 426683 28923955 ~ 28996300 (+) True G789754
TU899723 lncRNA downstream 501307 28998579 ~ 28998779 (+) True G790159
XM_021615349.2 mRNA upstream 156760 28331806 ~ 28340457 (+) True LOC110531872
XM_036987756.1 mRNA upstream 336963 28053620 ~ 28160254 (+) False ank2b
XM_036987777.1 mRNA downstream 56497 28553769 ~ 28663634 (+) False LOC110531878
XM_036987778.1 mRNA downstream 56511 28553783 ~ 28663634 (+) False LOC110531878
XM_036987776.1 mRNA downstream 106392 28603664 ~ 28663634 (+) False LOC110531878
XM_036987779.1 mRNA downstream 106397 28603669 ~ 28663634 (+) True LOC110531878
XR_005053221.1 mRNA downstream 395776 28893048 ~ 28894058 (+) True LOC118966022
TU896363 other upstream 1009694 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1117553 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2083685 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2538350 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2754308 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 842709 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 843175 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1785403 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1785403 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 3098724 31595996 ~ 31596918 (+) True G793757