RNA id: XM_036987779.1


Basic Information

Item Value
RNA id XM_036987779.1
length 2967
RNA type mRNA
GC content 0.56
exon number 17
gene id LOC110531878
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28553769 ~ 28663634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctgcctggtgtgtttaaaTATGCTTCCCTTAGTTAACTGCACACTGGAATACGAGCCCGAGGGAGAGCTGGGCGGAGAGAAAAGGGGTCGCGTCTCACCTTTCAGcaaagatagagagggggagatattCGAAAAGTTCAGTCTGCCCTCGGCGCGCTTGCTTGCAAGGCACGACTAGCCCTCTCATTATTGGCCGCCTGTCAGCACCGTAGCAGACGGCAGATGCGAGCGTTCAAACAAGATCCGTTTCTGAGCTGAGCAGACCATGCAGGCATAGGCAGTTTGAGTAGGTTTTGTAagagggaggaggacggaaggaAGGAAGCAAAGAGGGGAAAAGAGCCGGAGAAAAGTTTGTAAGGAGACTCGTGACGGAGACGTTGCCGGTTGGTCGCAAAGCGCCCGGTGGTGAAAGACTGTTCAGAGCTGGTATCGCGGGGCAAATCTATCCTCAAAGAAACAGACAAGGGTTCCGTCGTTGGCCGCTGACCCGTGGAGAGAGGGATTTTTATTGATATTCGACAGCTGCCGGCCACTCGCCTGCTTCTGTTTGCTGGGATTTAGATGCGTTGGGAAGCCACCATGCGGCGCGATCCCATTTTGTTCGCTTCCAGGGCCATGGAGGAGTTGGTGTGTGAGCTGCGTCTGTTCCTGGACCTGCTGGACAGGGAGTATCTGAGTTCTGGGGTCAGGGAGAAGAAGATGCTCATCTCCAACATCCTCCACAGGGTCCTCAACGCTAATGaGCCCTCGTTCAAGTCAGAGATCCACAGCAGCCTCCCGGCCCCCCCTCAGATGCCCCTCCCAGAGATCCCACAACCCTGGCTGCCTCCAGACAACgggcctcctcctctccccagctcGTCTCTCCCAGAGGGCTACTATGAAGAGGCCGTCCCCCTCAGTCCTGGAAAAGCCCCAGAATACATCACCTCCAACTACGATTCGGACCAGATGAGCAGTTCGTATGAGTCGtatgacgaggaggaggaggacgggaaGGGTAGAGGGAAGAAGATGCGACACCAGTGGCCTAGCGAAGAGGCCTCCATGGATCTCGTCAAGGACGCACGCATCTGTGCCTTCCTGCTGCGCAAGAAACGCTTCGGCCAGTGGACCAAGCTGCTCTgtgtcatcaaggacaacaagcTGCTGtgcTACAAGTCATCTAAAGACCAGGCGCCCCAGATGGAGCTAGTGTTATCAGGCTGCAGCATCACACACGTCCCCAAGGACGGCAAGAAGAAGAAACACGAGCTGAAGATAGTGCACCAGGGAGCAGATGCCCTGGTCCTGGCCGTGCAGAGCAAAGAGCAGGCTGAGGAGTGGCTCAAGGTTATGAGGGAGGTGTGCAGCAACGGAGGGGACTCAGATGGAGCAGGCGCCGGGTCTCCTGTACATAAGCCCGACCTGGAGAAGAAGGTGTCATGTGATAGGCCGAGCTCAGATGGCGAGCCGCCCCATGAGAACGGACACACCGTCACCGACTGTAAGGACCAAGgtaaaGGAAAGAAGGACTCTCAGAAGAGTCAGAAGGGAGGCACGCTGGGAAAAGGGGCGGGAAAGAAGATAACTAAGATAATTGGCCTGGGCAAAAAGAAGCCGTCCACTGACGAACAGACATCTTCAGCCGAGGAGGACATACCCACCTGTGGCTACCTGAACGTGATGTCCAATAACCGCTGGCGTGAGCGTTGGTGTCGTCTGAAGGACAACCAGCTGTTGCTCCATAAGGACCGCGCTGACCTGAAGACCCATATGGCCAGCCTGCCCCTCCGAGGCTGCGAGGTCAGCCCCGGGCTAGACTCCAAACACCCCTTCGCCTTCCGCCTGCTCCGCAATGGACAGGAGGTGGCTGTACTGGAGgcGTCCTCCTCAGAGAGTATGGGTCGGTGGTTGGGGGTGCTGCTCGCTGAGACTGGTTCCACCACAGACCCTGCTGCCCTGCACTACGACTACATAGACGTAGAGACTACCGCTAACGTCATCCAGCTGGCCAAGCAGTCCTTCTgCTTCACTAGTAAACGTGTTGTATCTCCCAACCCCTATCTGGACAACCCTGTGAACGGTTATGCCTGCCCCTCTGGAATGGCACTGCACTATGATGATGTGCCCATCAATGGAAcgCTGAAGGGAAAGAAGGCCCCAGTGACCAATGGGACAGCGTCTAAACAGAAGTTGGACAAGAACCAGGCCAAGAAGACCAATGGAACAACCAGTGGAGCATCTGTGAAACGCAACAACTCCAgcGCAGAGCAGTATAAGTACGGTAAGAACCGCGTGGAGGCGGACGCAAAGCGGCTGCAGGCTAAAGAGGAGGAGCTGATGAGGAGGAAGCAGGACATCAGGAATCGTCTGACCCAGCTGAAGAAGGACCGGAAAGACCTGCGCACCGCCATGGAGGCCAGCACCGgtaAGCGTTCCGCTGTGTCTCTGGTGGAGCGGCTGAAGAAGGTGGAGGACGAGTGCAAGCTGAAGGAGGACGAGAGGGTGAGCCTGGAGCTGGAGCTGACGGAGGTCAAGGAGAGTCTGAAGAAGGCCCTGAGTGGAGGAGTCACCCTGGGACTCACCATTGAGCCCAAGTCTGGCACCTCCAGCCCGCAGTCCCCAGTGTTGCTGAGGCGTACCCTAGAGAACTCTCCCATCTCCAGCTGTGACACCAGCGACACAGAGAGCTGTTCTACTCTGCCCGTCAACAGCGCCTCCCTCCTCCGCAGGACGGCCAATCAGAAACCCTCGACCGTCCGCGGCCACGTCCTCAGGAAGGCCAAGGAATGGGAGATGAAGACTGGCACATAAGCAGCAACTCTCTTCACAAACGATCCTATTGTACCagcttgtttttttgtgtgtgtgtatatatttattcACTTTTCACATGGGGGAAGAAGGTTGAAGAGGAGTACACTACAAGCGTAGCATAGCCAACCAGAAAGACGATGCTGATTTGAGTATACTTTATTTC

Function

GO: NA

KEGG:

id description
K18616 AFAP1; actin filament associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899005 lncRNA upstream 64522 28531813 ~ 28539147 (+) True G789493
TU898979 lncRNA upstream 156335 28447127 ~ 28447334 (+) True G789481
TU898969 lncRNA upstream 166119 28436588 ~ 28437550 (+) False G789472
TU898970 lncRNA upstream 166272 28436588 ~ 28437397 (+) True G789472
TU898821 lncRNA upstream 220345 28381131 ~ 28383324 (+) True G789339
TU898997 lncRNA downstream 3628 28667262 ~ 28670285 (+) True G789485
TU899150 lncRNA downstream 33059 28696693 ~ 28700897 (+) True G789629
TU899279 lncRNA downstream 260321 28923955 ~ 28996300 (+) True G789754
TU899723 lncRNA downstream 334945 28998579 ~ 28998779 (+) True G790159
TU899736 lncRNA downstream 351532 29015166 ~ 29020160 (+) True G790172
XM_036987770.1 mRNA upstream 55293 28481155 ~ 28548376 (+) False LOC110531876
XR_005053221.1 mRNA downstream 229414 28893048 ~ 28894058 (+) True LOC118966022
XM_021615358.2 mRNA downstream 372821 29036455 ~ 29039588 (+) True LOC110531882
XM_036987790.1 mRNA downstream 584493 29248127 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA downstream 584499 29248133 ~ 29337758 (+) False rbpjb
XM_036987792.1 mRNA downstream 636241 29299875 ~ 29340353 (+) False rbpjb
TU896363 other upstream 1116146 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1224005 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2190137 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 2644802 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 2860760 25712997 ~ 25742909 (+) True G785962
TU899899 other downstream 676347 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 676813 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 1619041 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 1619041 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2932362 31595996 ~ 31596918 (+) True G793757

Expression Profile