RNA id: XR_005053222.1


Basic Information

Item Value
RNA id XR_005053222.1
length 4911
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110531884
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29140350 ~ 29174588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTGCTCAGAGGGGGAGGGCCTTCGCGTCAGAGCCGTAATGTCGTCAGATTCATGTAATGTCGAAATATCGGCATTGAAAACAGCGCTGTCGCGGTTGCCGTTTGGCGTCCATGATAAGTGATGCTACTGCAGAGGATTCCGGAGCGCGAGCTCGGAACGCAGCGGGAGAGAAGTAAccactccccctcttctcctctttacTTCAAGTAACGGCAGGTTGTGCCGGTGGAGTAAGCCGCAGCCCAACATGATCCCCTCCGATTGATGCGCAAACACGTCAAGTGTTTTGCCAAGCAGCTGATCGCTTTCATCAGTTAAAGCCATGCCTGACGAGTAAATATCCCTACTTGCTCAaggcaataaaaaataaaaaaacagcccCCTACATGTCTCTGCAAGTAGACTCCCTCTTGTTCGTCCTGCTGGAGTAAATCCCCCCTTCCAGATAGGCTCCACTGCCCTCTCTCCGCACCGCCCCACTACTGCCTCTCCACATCCACCTGTCACAATGCCGCTCCACCTCAGAATGGTCAACACCTAAAGATTCCCATGCGTCCAGTGAGCGACGGTCCTGCTCCTGTAAGCTTCTCACGCCCCCACCCCCCAGTTGGCCCCCTGCCCACCTCTGAGATGTCCCTGCTCCACTCGCTGGGCCCAGTGCAGAGCTGGCTGGGCCAGGAGCTGGAGAAGTGCGGGATTGATGCCATGATCTACACCCGCTACGTCCTCAGCCTGCTCCTGCACGACAGTTACGACCTGCAGGATCAGGAAAATGACATCTTGGGCTGGGAGAAGGGAACTGGGAAGAAATGGGGCAAGAGTAAGAAGAAAGGAGGAGGGACGGACCTAAGTCTGGAGGAGATAAAGAAGCAAGCCGCTGTGCAATGTCTGCGTTCAGCATCTGATGAAAACTCTGGAATTGAGAGCCTGGTCGAGGAGCTTTGCTCCAAACTCAAGGACAtccaaaacaaacagaaagAAGAAAAACCGCTCAACAAATCTTATGGATCTCAGTCTCCTGAACAAGTTGAGTCCTCTTCCTCAAAGGACCAGGTGGAAATGTATTATGAAGCCTTTCCTCCTTTGTCAGAGGGATCTGTTTGTCTCCAAGAGATCATGACGGTGTGGAACAAAGCTAAAGCCAGCGCTTACTCTGGCTCATCATCCTCTGCAGCCCCGCAGACCAGCACTGACACCTCCTCCCCAAAAGATTGCAACAGCGATGGTGAAGCTGCTAATGAGAGAACCCCTGAGGCATGCAGCACTACCACTAACCCAACCAGCGAGAGAGCCCAACAGCGACGCAgcaagaaggagaaagagaaccGATACCATGGTGGCGCAACTGCGGAGGACCGAGCTGCCGTTCACAGCAAGAGGCAGGCGAGGCACAGGTCAGAGTGCAAGTATCGGCCTCGCTCCTGGTCCTCTGGCTCTAGCGAGGCTGGCTCGAGCTCCAGCGGGAACCCAGGCGATTCCAAAATCTCCAGCAGGAAAGCAGTCAGAATCAGGCACAAGTCCAAGGAGGCGGGCAGCAGGAGTAAGCGGGGGCGCAACAGAGGACAAGTGAAACTGGCTCTGCAGGCCATTGACAAAGAGGGGCGCAGGAACGCTGGaggcggcagcagcagcagcaccactGGAGGCTCTGCAAGGCAAACTCAGCTCTACAAAAAGGGGAACAGGCCGCTGAAGGAGATTCGAAAATATCCAGGTTGGGGGGACGCAAAGGAGTCCGGAGCTGAGGCCAGCAACAAAAAGGAGTACATGGAAGAGCCCCTGTGGTACACAGAGCCCATCACAGAGTATTTTGTACCTTTCAGTAGCAGAAAGAGCAAACTGGAAACAAAGTACCGGAGTAAGGTGGACTCTCCAGACGACTCGACTATGTCCGCTAACTTTGAAAGGCTGTCTGAGAGAATGCAAGGCATCTACATTGCCAACGCAAGCTTCCAGAGGGCGTATCTGGCAGCGGGAACCTTTGTGGATGGGCACTTTGTTGAGGTGCCAGGCGACTCAAATGAGGAGGCTAACGACCTCAATGGGACCTCAAGCTTCCCTCCGCCTGAGGATAGTAGAGATTTAGATGATGACCATCTGTCTGAATTCACTCACTTCTATGAAGTCGATATTTATCAATCCATATTGGATCCTAGTGCCTCAGACTCAGTAAAAGAGAGTCGGATCTTGAGCATGATTCGACAGAATAGCGAAGAACAAAGAGACTTTGAGACAGAATGTTGTTTAGTGTTAGATGGCCTTGAGCTGCAAGGGGAAAGTGCAATAAGGGTGGACTGTCAGGAAACTTTGGCAGCTGATGGGTTCTTCATGCAGGATTTGGAAAACATGGCTCAGATCTGGGGATGTTATTCATCCTCTAGCTCTGAAGATAAGGATGGAGAAAGCTTTGTAGGGGACTCACCTGTTCAGCTCTCCCCCGCTTTGGATGGTGTTACATTCACCATCAGCACTGGAAACCTGGAGGAGCCTCATCTCCCAGAAGCCACGAGCGAAGCGTCTGGTCTGAACAACTCCTGCTTCTCTCTTTTTGAGCTCCAGTACGATAGCCCCACTCTTTCTTTTCCCTGCGACTCACTCACCGTTGGTCAAGAAAACAACACAGATTCAAGTAGCTGTCTAGAACCACATTGTAACAAGCAGTCTCGTTTGCTAATTTGGACCAAAAATAGTGCCTTCGATGAAACTGAACATTGTTCAAACCTTTCAACCCGAACCTGCAGTCCATGGTCACATTCGGAAGAGACGCGTTCAGACAATGAGCAAATAAATGTTCATACAGAGGAGTCCGCTCTAATTGGCAATGAAGAGATGAATTGTATAATCCTCCCCATCTCTGGTACATACCTAGAGGAAGAAATCCTGGACTTTTTACAAGAAGACACCGGTCGTCAGTGCGATGAGGCCAATGTTGGCACAGTGTCCAATCCGACCTTTGCAAAGAAATCTAAATTGGAGTCCATTTGTGGGATAGCGTTAGAACAGTATGATGCTGGCATGTTTTCGCATGACACAAACCAACAGTGTGACAACTACAGCTCAGGGATAATAAAGGATATTTGGACAGCTATCGGAGATGAAGATCCTGAACTATCACTAGGAGGAGAGAAGCCAGGCGAGGGCTTGTTCTCCAAAGAGTCGAGCAGCTACCACTGCGGTTGTCTTGACGTGCAGGTAAAGGAAGTTGGTCCCATCCAGGGGCCTCTGAAGAAGGCAGTGCAGCACTCTGAGTACCACCTGTGGGAAGGCAAGAATGAAGAGCAGGCCCTCCTGGCCAAAAACAAACTCTCGAAGATTAATGCTTCCGGGGATTACATGACGCCGTCCAAGCCCTGGGACGTGAACCCTGAGAAAGACAACACATCGTTCATCCTGGGAGGAGTGTACGGAGAGCTGAAGACATTCAGTGGTGATCAGGACTGGGCTGTGGTGCCGCCTGGCGACGCGAGAGGCAGCCTGCTACAGTGTGCCGCTGCTGCCTCTGCCTCAGATGTGGTCACCATTGCTGGTACAGACGTGTTCATGAATACGGGCAGCTGCTTTGCCCCTGGCCATAAGCCCTTCTGGAGGCCCCTGGTCTCCTTCGGGCAGAGCGACCAGGCTACTAAAGGAAGTGGGGAAGGTTTGAATAAGGGATTTTCTTTAATCTTCCATGAAGATTTACTCGGATCCTGTGCAGGCTTCCAAGGAGAGGAGCCAGGACTCGACAACCCGTTTGCGTCCTTCGATCTGAACAATCAGTTCTCTCAAGTCCTCCATGTAGAATGCTCCTTCGAGCCTGAGGACATGGCTTCGTTCAGCCCGGGGTTCAAGCCCAAGTCTATATTGTGCTCGGACTCTGAGAACGACGCTTTCCACCCACGGCTATACGGCATCAACCAGACCACCCAATACAGAGCTATCCGCATCTCCCCCAGGACTCACTTCCGACCCATATCCGCCTCAGAGCTGTCGCCCGGTGGAGGGAGTGAGTCGGAGGCTGATtctgagaaagaagaggagaagagtgtTCCATTCCTGGCCCTGCCAGATGTCTTCGATGACCCTCAGGCAGACCTCAAACCGCTAGAGGAGGACGCAGAAAACGAGGGCCCCTGCTACGGGAAGTCAGAACTGGAATCTGGTAAGTTCCTGCCCAGATTGAAGAAGTCTGGCATGGAGAAGAGTGCCCAGACCTCACTGGATTCTCAGGAGGGCTCTAGCACCCTTCTGCCAATCGCTGAGCAAGAGATTTGCTTAGACTGCGAAATGGCAGCCGCAGCAGGAGCAGCAACATTGATGGCAAGTGGACGGATGGACGTCCCAGTCAATCAGATTCAGAAGGAAGAATCTTGCAGAGAGAAGGAAGCCTGCAAATGTGCAGCGGCTGGTCAGTGTCCCACATATGGGAAAACCTATGACTTCATTGAAGATTTGCATGAGTTCCCTCTATTAAATATTAGTGGACAGGGAGGAACTGGCAGCCAGCAAGATGAGTGCTGGTGGCAGAACAAACTCTGTTCCCCCCTTTTCCCCGGATCTCAGTGTACAGGGAGCAGCAACATCTGATAactagctctgtggagtgtaagcCTATTGTCGAGAGGATATAACCTCTTCTCGTTTGACTGCACCTCTACTAGCAGATATAGGGGAGACCTCAGGACCGGGAAACCAAAGGCTTCTGGACAGAGGAACCCCTCACCACATCCCAACCCTGCTGATTTTCATTTACTAACTTGAATCATGACACCCTCCCATCCCAGCTCATCCCATACCTTACTCCCTCATCCTTCTCCCAACTGTGTCAAGTGGTTGTATTGTTTTAATTTCATGTACACCCCgagtaaattatttttttcattggagtttttttaaaaatctaataAAGGTATAAACCAAATCACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU900168 lncRNA downstream 3910 29104062 ~ 29136440 (-) True G790573
TU900149 lncRNA downstream 62316 29077824 ~ 29078034 (-) True G790556
TU900146 lncRNA downstream 69089 29070083 ~ 29071261 (-) True LOC110531883
TU900135 lncRNA downstream 82434 29057637 ~ 29057916 (-) True G790542
TU900134 lncRNA downstream 82769 29057348 ~ 29057581 (-) True G790541
TU900314 lncRNA upstream 150928 29325516 ~ 29328373 (-) True G790716
TU900323 lncRNA upstream 157702 29332290 ~ 29332787 (-) True G790724
TU900330 lncRNA upstream 163178 29337766 ~ 29339792 (-) True G790731
TU900332 lncRNA upstream 165295 29339883 ~ 29342202 (-) False G790732
TU900333 lncRNA upstream 165295 29339883 ~ 29340307 (-) False G790732
XM_036987787.1 mRNA downstream 627 29070047 ~ 29139723 (-) False LOC110531883
XM_021615359.2 mRNA downstream 676 29070047 ~ 29139674 (-) False LOC110531883
XM_021615360.2 mRNA downstream 738 29070047 ~ 29139612 (-) False LOC110531883
XM_021615361.2 mRNA downstream 38734 29070047 ~ 29101616 (-) False LOC110531883
XM_021615356.2 mRNA downstream 95154 29042575 ~ 29045196 (-) False LOC110531881
XM_021615366.2 mRNA upstream 169793 29344381 ~ 29353599 (-) True LOC110531887
LOC110532982 mRNA upstream 1185219 30359807 ~ 30360792 (-) True LOC110532982
LOC118965933 mRNA upstream 1658138 30832726 ~ 30834388 (-) True LOC118965933
XM_036986936.1 mRNA upstream 1863490 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 2194895 31369483 ~ 31494494 (-) True LOC110531151
TU900144 other downstream 71163 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 91106 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 96543 29043436 ~ 29043807 (-) True LOC110531881
TU899489 other downstream 474292 28663451 ~ 28666058 (-) False G789945
TU899399 other downstream 487879 28528820 ~ 28652471 (-) True G789863
TU901919 other upstream 1140722 30315310 ~ 30357964 (-) True G792267
TU903165 other upstream 2228894 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 2243867 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 2486651 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 2851483 32026071 ~ 32028268 (-) False G794311

Expression Profile