RNA id: TU899897


Basic Information

Item Value
RNA id TU899897
length 1732
lncRNA type sense_over
GC content 0.40
exon number 1
gene id rbpjb
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29248127 ~ 29342203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCTGGGgatttctttttgttttgtttacctAACCGAAGGTTCGGTTTGTGTTATGAAGTGACCTCAGAAGGCCTAATTTTGGATTCTCCATTGGTTTTTATGAAGTCTTTAAAAAGAAAAGCTTTAAGCAATGCCTCTGCCTTGTCTGCAATACTCTCTGTGTGCTACTCGCTACGTTTCCTTCGGAAATTACATGTCTGTACATCACACAAGGAGCCATAACGAAGTCTGCAGAATTCTTCCATTGTATTTCAAACTTTAAAAAACTCGACTTCCACTACCAGTTACAAAATAGTTTCTCATTTCCACATACATTTTATGATTCTAGTCATCAAATTGAAAAGGTAGCCTTAGAACTGTATATTATTACTGTGCACACAGTCAGAAGATATCGTGTCATATATCCCATGTTGAGATCATGCCGATGTATTGGTCGCCACAGAAGTATCTGACGACGTCTTGAAATCTGTCAGTCCGTATACTGTCTCACCAGGCCTTGGTGTCTTCCTGTGTATAGTTCTCGTGGTATTTAAAACTTCCATTGTTTTGAGAAAACAGAAAAGACAGACCAATTTGATGTGGCCTTACCGCTAACTTAAATGTCAAAGAGAACCGATACCCTTCCAACGACCTGCCCTTTCCATTTACGTAACTTCCAAGAACCTGTGTGATGCAaaaacagtctgtctgtcttatcACCACTTGTTAAGTTGTTTCATTGGACTATATTACCCATAATGCAATCCAtctgccactgctccaaaaccacattGTCAGCCTTCTGGAAGATTTGTGGACCTTTTTAAGAATAATATTAACTCTGTTCAGTGTACAAGTacaatacttatataaatgatgTACTTTATTATCACAGTGCCCTGCTTTCTCCATTTTGGCATGGATACATTGTCTTGTGAGGGCTTTGAGCTCCTCTGTTTGGCCTCCTGAAAGCCTTTTAACTAACGTCCTGTGGTTTTTGACCTTACACAACAATTACATGTACATTGTAAAACTCGCTTTCTGAAAGTAGCCACACTCACCGGCTGTATTTATGGTGATCAAGTCTCCTGTTAGAATTAATAAGGCCTTctagatgtgtgtctgtgtaattgAATATGTGTATTTGGAAAAACGTACAGCAATATTGTACAGGTCATGTCGTCGTGTCTCTTGGGGTTTGTCTGCCTGACCACTAGTTcaccagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggtggggggggttgtgtgtgtgtgagagtgagtgtgtgtgtgagagcgagtgtGTGTTTGGCTCCTCTGTGTAGTCTAACAATGGAACAGTGAGTGAGACTCGCTCCATTTCAAAatgtggttgggtgggtgggtgcgtggATGCGTACACCGTTTTATGTTCCAAACAATCAATGCTCTTGTAAAGATGGACTTTGAAGATTGTTTGGGTCCCGCGCCGTCTTCCGACTTGATCCAAATATAAAACAAGTGATTGTTTCTCTCTCATTGTTGGAAATAATATGTGGATCAACacaattaaaaaaagaaaaaggcaATACTTTGATCATAGTATTACAGTGGAACTGTATATACTTCCGGGAAGAACTATGATGCTTTAACTTGAATGTCTGCTTATTAATTAAGAAGTATTTCTGGCCAATGTCATTCATGTACCCATTTAACAGTCATATCCCTTTAATAATGGGGAACAAAAAAGTGCTctatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899901 lncRNA upstream 150 29337786 ~ 29338444 (+) False rbpjb
TU899778 lncRNA upstream 252718 29085649 ~ 29085876 (+) True G790214
TU899775 lncRNA upstream 258524 29079844 ~ 29080070 (+) True G790211
TU899770 lncRNA upstream 265567 29072776 ~ 29073027 (+) True G790206
TU899769 lncRNA upstream 266196 29070129 ~ 29072398 (+) True G790205
TU900086 lncRNA downstream 202694 29543019 ~ 29543870 (+) True G790493
TU900498 lncRNA downstream 229522 29569847 ~ 29570077 (+) True G790888
TU900523 lncRNA downstream 248919 29589244 ~ 29589523 (+) True G790913
TU900528 lncRNA downstream 251920 29592245 ~ 29592728 (+) True G790918
TU900542 lncRNA downstream 260892 29601217 ~ 29601417 (+) True G790932
XM_036987791.1 mRNA upstream 836 29248133 ~ 29337758 (+) False rbpjb
XM_021615358.2 mRNA upstream 299006 29036455 ~ 29039588 (+) True LOC110531882
XR_005053221.1 mRNA upstream 444536 28893048 ~ 28894058 (+) True LOC118966022
XM_036987776.1 mRNA upstream 674960 28603664 ~ 28663634 (+) False LOC110531878
XM_036987795.1 mRNA downstream 13791 29354116 ~ 29381669 (+) True tbc1d19
XM_021615368.2 mRNA downstream 42767 29383092 ~ 29473789 (+) False stim2b
XM_021615370.2 mRNA downstream 42768 29383093 ~ 29473789 (+) True stim2b
XR_002474771.2 mRNA downstream 942312 30282637 ~ 30286239 (+) False LOC110531891
XM_021615374.2 mRNA downstream 1034046 30374371 ~ 30594050 (+) False LOC110531892
TU896363 other upstream 1851071 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1958930 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2925062 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3379727 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3595685 25712997 ~ 25742909 (+) True G785962
TU899896 other downstream 122 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 942350 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 942350 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2255671 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 2413010 31753335 ~ 31756445 (+) True LOC110531915

Expression Profile