RNA id: TU899896


Basic Information

Item Value
RNA id TU899896
length 1757
RNA type TUCP
GC content 0.41
exon number 1
gene id rbpjb
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29248127 ~ 29342203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAATGTAAACAGTGTAATATTGATATTATTTTAAATTATTGGTATAAAGTTTCCCCCCTTGTCTTATTTTATGTCAAAGAAATAAGTGCATTATTGCCCTTGCTGCCTAGTTTGGCCTGGGTTGTCAATTTACAAAAGGTCGGTCCAGCAACAGTTGTACTTTTTCTAATGAATTAAAGCATGGGTGTATCAACCTAAATTGAACATTTTGTAGCATCAAACCAACATGAGCTTTGTCACTAATCAccttaatatggactctttttttttttacacaacaaAGAGAAATGCTACTGGCCTTTCTTAACCCTTTACTCTATTGTGATATGTCAATAAGGTGGTCACCAAATATGTTTGGGTTTTGCGCAGTGTTTTCATTGTGCCCGTTTCAGCTGGTAGAGGCGAGCTTATCTCTTAGATATCAAAGTGAGTTTGGGAACGCCTCTCTAATGCCTAAGGCGTCCTCCAGTCAGTCGATCTGTCATTCTGCTTGTGTTATTATATTTCTGTTTCGATACTTTCTGTTGTCTCTCTGGGCTCCACCCTGCCTGCTCCTTACGTTTCTCACTGATGCCCGGGTGAGTTTGGAAGGAAGTGGCATTGCGCTGCATCTCTTAAACAGTGGAAGGGTCGTGCGTATTCTCATATCTCTCTTTGATCCTCTTtgctgggtcatgttcagtaggcgGGAAATGGAATGAAACGTTTGCaacggtgtgccctaatgaacatgacactGGTTGAACGGTTTACATGTGCTCTATAGAACAGTGGAGGCATGGAGgattggagcaggaggagagggtggGTCCAGAGAACCAACTATTATGGTCAAGAAGCGCATCAGTGCTCCCCTTCCTCAGGTTTCACTCAACAAGGGGAAGGCAGCTCTCCCCCCTACAGGGGGTGGAATGTTGTTACGTGGCTTTTTATTATCTGAGCAAACTTTAGCAACATGGTAACAAAAGGTCACCCAGCAAAATACAAAATATTCTCCAACTTGTGTGATGCTTTTTGAAAATACTGTATACACACCGGTTTTCATTTTTCGGTCAGTCCATATGGTTTGTTTTGTTCTTCCAAAAGCagctgttgttttttgttgttgtaacgaGCTCTGaacaatgtatgtatgtatgtatcctcTAATATACCAAATGTCTTTTTATAACGTAGATTTCTCATGCACTGCTAAACGAAACAGGACAGACCGAGAGGCAGCTGTAAATAAATGAAAAGGCGTGTTGGAGCAGCCTTTCCTCTGTTGCACTCGGCCTGACATTCTCCCCAAGACTATTGGCTGGCTGCACTATGAAGTGCTTTAcgcttctctctttctttccgtctctcctctgtctgtgtaCGTACATTTTGACTTACCCTCTCATCCCTTTACACTCTTAGCTCTGTACGCTTGGCTTTGCTGCAGTCTCTTTCCCCCCTCACACGTCcattctcacacactctctctcctttctcacactctctctctctctctgtgtaatgttGTAGTAATGTTAAGCAGAGTGTCAGTCTGTCAGTGTGGTAGTATACTCAGTGCTTAAAGGGTTGCCGATGGTAGAAACCTGTGCAGTTTGTAACATTTTAGCAATAACGTGAAAACAAGGGGACTGTTTGTTTCAGTTTTTTGTACATATTTCAGTTCCAGTTCATGCTCAAATCCAtatgtcattaaaaaaaaatgttacttGCAATATTGGcataaaaaaaaatcaagaaataAAAAGTGACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899897 lncRNA upstream 122 29338594 ~ 29340325 (+) False rbpjb
TU899900 lncRNA upstream 647 29338594 ~ 29339800 (+) False rbpjb
TU899901 lncRNA upstream 2003 29337786 ~ 29338444 (+) False rbpjb
TU899778 lncRNA upstream 254571 29085649 ~ 29085876 (+) True G790214
TU899775 lncRNA upstream 260377 29079844 ~ 29080070 (+) True G790211
TU900086 lncRNA downstream 200816 29543019 ~ 29543870 (+) True G790493
TU900498 lncRNA downstream 227644 29569847 ~ 29570077 (+) True G790888
TU900523 lncRNA downstream 247041 29589244 ~ 29589523 (+) True G790913
TU900528 lncRNA downstream 250042 29592245 ~ 29592728 (+) True G790918
TU900542 lncRNA downstream 259014 29601217 ~ 29601417 (+) True G790932
XM_036987790.1 mRNA upstream 94 29248127 ~ 29340353 (+) False rbpjb
XM_036987792.1 mRNA upstream 94 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA upstream 94 29321604 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA upstream 2689 29248133 ~ 29337758 (+) False rbpjb
XM_021615358.2 mRNA upstream 300859 29036455 ~ 29039588 (+) True LOC110531882
XM_036987795.1 mRNA downstream 11913 29354116 ~ 29381669 (+) True tbc1d19
XM_021615368.2 mRNA downstream 40889 29383092 ~ 29473789 (+) False stim2b
XM_021615370.2 mRNA downstream 40890 29383093 ~ 29473789 (+) True stim2b
XR_002474771.2 mRNA downstream 940434 30282637 ~ 30286239 (+) False LOC110531891
XM_021615374.2 mRNA downstream 1032168 30374371 ~ 30594050 (+) False LOC110531892
TU896363 other upstream 1852924 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1960783 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2926915 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 3381580 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 3597538 25712997 ~ 25742909 (+) True G785962
TU901372 other downstream 940472 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 940472 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2253793 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 2411132 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 2780479 32122682 ~ 32124851 (+) False zgc:112271

Expression Profile