RNA id: XM_036987795.1


Basic Information

Item Value
RNA id XM_036987795.1
length 3128
RNA type mRNA
GC content 0.44
exon number 21
gene id tbc1d19
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29354116 ~ 29381669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTATTTTTTGTTTCCTCTACATCCATAGTCCGTAGTTGCTAAGTAACCACTGCAGAGGCCAAAGGCTGCATCACCGGATACCAAATGGATTCTAAAAGTCTAATTGCCTTATCGTAGTGTAGATAAACCAAAACGAGCATTGAAAATGATGGATGAGGGAACGGAGTTATCACTGACAATTGCGCAAATTGTCCAGCGACTGAAAGCAACCCATTTACACTCTCAAATAGAGAGACAGGCCAAaGAGTGTTTGCATAGACCCGAGATACAATTAGAATCTCTAAAAGAGGACGTTCGTAATTTTCTCAAAGCATCAGGTTGGGAGAGAAAGCTACAGAATGCAGTATACAGAGAGTTGCACGttcagcCGCTCCCCAGCCACCCTGCAGCTCCCCCAGAGCACGCCAAGGAGCCTCTGGCGTACATGCGCAAGGCCCAGGTAAACTGGGAGAAGCGTATCCTCAAAAGCCTGAACAGCATGTGCACAGAGCTGGGTGTACCCTTGGCTCGTAAGAGGCCAGCTGTGGAACAGAAGGAGTTGACCAACAAGTGGAACGAGATGGGGACAGACGAACCAGATCTAAGTCGTTTCAGGCCTGTCTATGCTCCCAAAGACTTTCTGGAGGTGCTGATCAGCCTACGGAACCCAAACCATGACAGCAGTGAGGAGGCCAGCGCAAAGAGTCACTGGGGCCTCATCCAGGTGCCCCTCCACGACAGAGACATACCTCAGATGAGAGAGGCCTATTCAGAGTTGAGCCTGACCACGGGGCAGCTGGGTATTGACGACCATACACACGTACCCCCAGATTTGTTTGAAAGCGAGCATACTCGCATCGGGAAGAAAGTGGTAAATGAGCAAGACAGTGCAGCAGCCCAGCAGTACAGTAGACAGGGCTGTCCCACTGGCCTACGAGCTGACCTCTGGGCCCTCATCCTCAACTCCACCAATGAGCCTGAGGATGTGATGCATTATGAGCAGCTGAAGGCTGGAGTCATACACCATGACCTGCTGGTGGATAACCTCATCTACAAGGATGTGAAACTGACTGCGAGTAATGATGACTACTACTTTGTGTTTGAAGATTTCCTGTATCAGGTCCTGCTATGTTTCTCTCGAGACACTGCGGTCTTGGAGCACTTCAGCTACAACAGTGCCACTCCTCCCAAATCCTACATTCAAGGCAAGGTGGGAGTTGAGGAGTTTGCTGTGGTGTATCCTCCAAATGGTGTCATCCCATTCCATGGTTTTTCAATGTATGTGGCCCCTCTGTGCTTCCTGTACAACGAGCCCTCCAAGCTGTACAGTGTGTTTAGGGAGATGTACGTACGCTACTTCTTCAGGCTgcactctgtctcttcctccacctctGGTATAGTGTCTCTGTGCCTACAGTTTGAGAGGCTGCTACAGACCCATCTCCCCCAGCTATTCTACCATCTACGGGAGATAGGCGCTCAgccCTTGCGTATTGCCTTTAAGTGGATGGTGAGAGCGTTTTCTGGGTACCTTTCTACTGACCAGCTCCTCCTTCTGTGGGACCGAATCCTGGGTTACGACTCACTGGAGATTGTAGCAGtcCTAGCAGCGGCCGTCTTTGCCTTCCGGGCTGAGAACCTGATGGAGGTGACATCACTGACCTCAGCTGAAGCCGTCCTCGCCGACCTTTCAACTCTGAAGGTCATGCCCCTCATTCAGATCTTCCTGTTCGCCACTGTCATCTGAGGACctgcgtgttgtgtgtgtgtgacacgtgtgtgcgcgcgcaccgGAGGAGACTTGAGCAATTGCCTGTGCTGTCAAGCTGTTCCCATGCCAACGCCAGTGATCGTCTGTCAGAGTCAGAGATGCCAACCACACCTTATATGGAATatgaaaaggcaaaaaaaaagaccCCTGAAACCTTGTATATCCATCCCACCATATTCCTTTCACTGTGTCAAAGCTGCATGTCCCTCTGCATGCACGCTACAGAAATAGTTATCACCATGTATCATATTATTAgatatattatacagtatgtaaGTATAGCCCTCAGATAAGCTAAGCAAATCTTACCTCCTTAAGCTATGCCCTCTAAGTAAGATGATATATATGCCAATGCTTGGGACCAGCTTGATGAGTCTATTGGAAGCTGGATTGCATGGAACAGTATTGTATTGGGTTGACAGTGTGAGAGAGGGAACCCACTGGctaaaaactggttgaatcaatgttgtttccacgtcattttaaCAAAAACAATtcaatgtgatgacattgaatcaaagTGGTAAACTGATTGGATtagcaaaaagtcatcaacctaAGGGAGTCGTATTTTTTTCACCCATTTtgtaacctaaatccaatgacatttttgttgatttcacgttagttgacaactcaaccaaatgtaaatcaaaactaggcATTGAGattacgtctgtgcccagtgggaagtagTTGTAGCTGTCTACAGTGTGACCATTGATGTGTTAAGGAAACTCTGATAAGTGTTCAGTGGGGTCTTAACATTTTATATTTTCATGAAGCGCTCCTTGCAATAATAATCCTGTATTAGACGCTAATCAGAAGCTGCTCTGTGTCGGGTTCCTCAAGAAaatgatctcagttaattcattaTCTAAGTCATAATTAATAAGGCTTAAACTAATATTCTAATGTTCATTTTTTAATATGCAAGATATTATCATAAGATATGACTTGTGTATAAGATATGCCATTACAACACTGTTTTTGTCTCAgtattgtttttattgtttttgtttttaattgtGAAAATGATCATTGAAGAACCTTTGTTTGAATTGTTCTTTTATGTAATTAGTGTACATTTTTTATGGATTTAATTAATTATTGCGTTCACATGCTATATTTTGTATTTGTCTCGCCCTGTTATTTGATACCTGACCCAATTTTGTTCCATTTTGTGCCCATTGTCAAATGTATGTGCCCAGattacatattttttatttacagtTTAATTTCAGGATTTTCTTACATTTCACCCTACCCAATGCGGTCAATGTCTCTGAGATCAGGGGACATTAATCAATCATAGCATCATAGCATAGTTTTGTTTTTCAATGCTCATTACATTAAAATAAAGTAATGAAACCTATA

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899897 lncRNA upstream 13791 29338594 ~ 29340325 (+) False rbpjb
TU899900 lncRNA upstream 14316 29338594 ~ 29339800 (+) False rbpjb
TU899901 lncRNA upstream 15672 29337786 ~ 29338444 (+) False rbpjb
TU899778 lncRNA upstream 268240 29085649 ~ 29085876 (+) True G790214
TU899775 lncRNA upstream 274046 29079844 ~ 29080070 (+) True G790211
TU900086 lncRNA downstream 161350 29543019 ~ 29543870 (+) True G790493
TU900498 lncRNA downstream 188178 29569847 ~ 29570077 (+) True G790888
TU900523 lncRNA downstream 207575 29589244 ~ 29589523 (+) True G790913
TU900528 lncRNA downstream 210576 29592245 ~ 29592728 (+) True G790918
TU900542 lncRNA downstream 219548 29601217 ~ 29601417 (+) True G790932
XM_036987790.1 mRNA upstream 13763 29248127 ~ 29340353 (+) False rbpjb
XM_036987792.1 mRNA upstream 13763 29299875 ~ 29340353 (+) False rbpjb
XM_036987793.1 mRNA upstream 13763 29321604 ~ 29340353 (+) False rbpjb
XM_036987791.1 mRNA upstream 16358 29248133 ~ 29337758 (+) False rbpjb
XM_021615358.2 mRNA upstream 314528 29036455 ~ 29039588 (+) True LOC110531882
XM_021615368.2 mRNA downstream 1423 29383092 ~ 29473789 (+) False stim2b
XM_021615370.2 mRNA downstream 1424 29383093 ~ 29473789 (+) True stim2b
XR_002474771.2 mRNA downstream 900968 30282637 ~ 30286239 (+) False LOC110531891
XM_021615374.2 mRNA downstream 992702 30374371 ~ 30594050 (+) False LOC110531892
XM_021615372.2 mRNA downstream 992702 30374371 ~ 30598347 (+) False LOC110531892
TU899899 other upstream 11913 29339981 ~ 29342203 (+) False rbpjb
TU899896 other upstream 11913 29340447 ~ 29342203 (+) True rbpjb
TU896363 other upstream 1866593 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 1974452 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2940584 26413112 ~ 26413532 (+) True G786496
TU901372 other downstream 901006 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 901006 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2214327 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 2371666 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 2741013 32122682 ~ 32124851 (+) False zgc:112271

Expression Profile