RNA id: XM_021615370.2


Basic Information

Item Value
RNA id XM_021615370.2
length 4321
RNA type mRNA
GC content 0.49
exon number 12
gene id stim2b
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29383092 ~ 29473789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCGATCTGAGCATCCGCGTCAACGTGACGTGCGAACTACCCCCGAAATGTTTGAGGAGAATTCCTCTGCTTTTTGGATGCAGTTCAGCAAAGCGACAGGCCCCTGGGGAAACCGAAATGTTTCAATCCAAATGCCAGTTTCTGCGGCGTGGACTTCTTCACAGTGTTCAACTACAACAAAACACATTGTATCCGCTACAGACCCACTCCCGAGAAACAGAAGATAAATTGTTACAATGCATCAACCCAGCGTACATGTCCCCAACACATCAGGGAGATAATAATGTGCAGTGGCTGATGTCAAGTGATTTGCATACCGACTTCCGCTCCATAGTTTTAGTATCTGCATCAGCCGGTATGTAATTGAGACGCCAGGGGAAGCAGACAAAGGAAGGCATGAATACCTGACATGAACTTTTAATCTAAGTTAAAAAGTCGGTGAACGTTGTGGACGCGGTGGAGGAACTGAAGGGCGATAGAGAGAAGCTGTTGATttccttcttcttttttttttttcagagtgGATTTGCTACATTCATATGAGGAGGCGGACCTCTGACTGCCGTGCTCAATATGCTGAAAGCAAGCCCGAtgtgtgcatactgtatgtgggaGTACAGAGACGATTTTGTCTTAATTCAATCATCAGGATCGGGATACATTGCACTTTAAACCGCGTTGGATGCACAGTTTATTTTTCTTGGCAGCAAGCTATAGCCTATTTATTTGgtcgtgttgttgttttgtttttttaccagACAGAAGATTTTATACTATCCATTTgcacttttcttttcttttgaagTTGACTTTAACAAAGTAGACTACCGGTTTGCCTCAGAGCTagctacctttttttttaaatcgtaaaaaaaaaattataatctgaTATTGATCCTTAAGGAACACATGAGGGGAATCTATTGACGTCTAACGTTACTTCGTGGCATGTCACACAATGGTGTCATTTTCGGATGGAGTTTTGAGGTTCCTAATATCTTCATTTTGAAGTTCTTGAACACTTGAATTAGGCTAGATCATTCTTTCTGTAGACAGGCCTAGAATTCATTATAGATGCCAATAGTGGAGCATTTCTTTGTTACACCAACAGATCCTATATACTATTTTTGCTGTTATAGACCACACCATATGAGTATATCTAAacactgctgtttttttttttttttgttttaagttTGGTGCATTTTATCTAACAACTGTTGTGTCTGACGTTCCATTCTTGTGACTCGACACATTCGAATATTTCTGCCCAAAACGTAATTCTCTACGTAGTCTTGGCACCCGGCTGAATCGTTGGAGAAAGCTTTCCATTTTGGCATAGCCATCGTTTGATTGATCGTCCCTTCACACCGAGAACAATTAGTGGCTTCCCTCACGATGAGTTACTTCTTCTACCAAGCAGTGATTGTATTGCTACGTGGACTCGTCATCTCTGCGGTACTGGGATTGGAAAGCAGCTACTCAAACGATATGTTGAACCGTGCGTCTGATGCCGCAATTGTAGCCACTACAGaCCCCTGTCTGACGGTGATGCCGCCATGCATGGGCGACGCAGACCGTTTCAGCCTGGAGGCCCTCCGGGTCATCCACAAACAGCTGGACGACGACAATGACGGGGGGATTGAGGTCAACGAGAGTGTAGAGTTTATTAGAGAAGACATGAAGCAACAGCAAACCAACAAACACAGTAACCTGCACAGGGAAGACCAACACATCACTGTAGAGGAGCTGTGGAAGGGCTGGAAAACCTCTGAAGTTCACAACTGGACGACGGATGACACAGTCCAGTGGCTTAAGGAGTCGGTGGAGCTGCCTCAGTATGAGAGGAACTTCAGAGACTTCCGGTTCAACGGAAACACTCTGCCTCGaTTAGCGGCAAACGAACCGTCGTTTATGTCTGGTCAGCTAAAGATATTAGACCAGCGGCACAAACAGAAACTAAATCTAAAAGCACTAGATGCTGTGCTCTTCGGCCCTCCCTTACGTCCACAACACAACTGGATGAAGGACTTTGTGTTGATGGTCTCTATAGTGATCGGGTTGGGGGGCTGCTGGTTCGCCTACATCCAGAACAAGTCTTCCAAGGTGCACATGAGTCAGATGATGAAGGACTTGGAGAGCCTGCAGAGTGCTGAGCAGAGCCTCATGGACCTTCAGGGACGCCTCGAAAAGGCCCAGGAGGAGAACCGCACGGTGGCAGTGGAGAAGCAGAACCTGGAGCAGAAGATGAGGGATGAGATCAGCGGGGCCAAGAAGGAGTCGTACCGCCTCCGCGAGCTCCGCCAGGGGGCCGAGTGTGAGCTCAGCCGCCTCAAATATGCTGAGGAGGAGCTGGTGCAGGTGCGTATGGCCCTGAAGCGAGCAGAGAAGGAGATGCAGACGGAGTGGTCGGTCCCAGAGGCCCTACAGATGTGGCTACAACTCACCCATGAGGTGGAGGTCCAATACTACAACATCAAGAAACATAGCGCGGAGCTACAGCTCACTGTTGCTAAGGAAGAGGCAGAGAAAATCAAAAAGAAGAGGAGTTCTGTGTTTGGAACACTTCACGTCGCCCACAGTTCATCACTGGATGAAGTGGACCACAAGATCCTAGAGGCCAAGAAGTCCCTGTCGGAGGTGACCGCCTGCCTGAGGGAGCGTCTCCACCGCTGGCAGCAGATTGAGAAACTGTGTGGCTTCCCCCTGGTGCACAACTCTGGGCTGCCCAGTCTAACTGCCACCCTGTACTCTGACCACAGCTGGGTGGTCATGCCCCGCGTCTCCGTGCCCCCCTACCCCATCGCCGGTGGAGTGGACGACCTCGATGAGGACACGCCTCCAATCATTCCACAATTCACCTCCTCTATAATGCGGCCCCCTCTGACGCGCAGCAGCAGCCTGTGTCGGTCCCGCCGGAGTCTCTACAGCACCCCGCAGCCTTCAATGATGTCTGCCGACCCTGATCTGCTCTCTATGTCCAGCCCACCCCTCTCCTACCACCCAGAGGGTGAAGAAGAACACATCCTCTTCATCGAGAGAAAGGGggACACTCAGGATACGTCCTCAGACACAGACTCTCTCAACTCCTCCATGGGACGGAAACAGTCCTATGCCAACCCCTGCACGCCAGGCCCAGAGCTCCCCTACCGCAAGATCTCCCGCGAGGAGCTGATGATGCTGAGCCAGCAGGAACCTCAGACTTACATCCGGGACTCACCCCCTCCTCAAGGGGGAGTTGCGTCCCTCTCGACTTCCTCCTCGGCCAACCCCTCCCCTGCCCTGGAGCACCACTCACACTCCCACACGCACTCGCACAAACACAAGGGCTCACCCGACCTCACCCGTGGCTCCatcccagagtcccacagcatgTCCTTCACCACCCCAACGGCGGGCAACAAGGCCGTATTCAACGGCATCCTGGAGAAGTCCTATAGCATGGGCCAGCTGCCCGCGGGCATGACGGGGGcagggggggtggtggtggtggggcgcaACCCATCCCTCACCTCACTGGATAATGAGGGCAAAGCGGGGGGCAAGGAGAAGAAACTACAGAGGACCTCTTCTCAGGACTCCTGTGACAACGGAGACAAGACCAAGAAGTCCTCGTCCAAGATCAAGAGCTTGTTCAAGAAGAAAAAGTAGTAGtactcagagagcgagagagaggggacaggacaaAAAAGGATCAAGATGAAGTCATTTTAGCCTTAATAAAAAATGTACGTTGTCAACGGAagctaaaacatttttttttgttccattgttccttttttttcttcaaagatGGAATGTAAGCTCTGTCTGGGCACCTCAATAATGCCTTTTAATGAATTGTTTTTGCTCACTCATAGCCTCAAAGTTAAGCCTTCAAAGGTCACAGAAAGGTCAAAAGGTAAAGGGTCATGCCAGCTGCCATCACCCAGGTAACCGTGAAAAGCATGAGCCTGCTCACTCAATGTCTTCTGGTTCTTTTTCAGTTAAAgaaacaaaaaatacatttcactTGTGTTCTATCTGGGGGTTGAGGGGCTTGTACTTGACACATTTATtttcagaagaagaaaaaaaatactacttaagtttGTTGCACTACTGCTTTCCTGTACTCTGGGAAAGGACCGGCGCTGCTCGCCAAGTAAATATTAATGTATACAGTACAGATGAGAATGATGTATGGGGAGAGGCATTGGAGATGCAACACATGGTAGGCTATTGAAGCCAAAATCGCTTGGtgtttccaatgtttttttgcaaTGGATtttatttatacacacacacacacacacacacacacacactgagtataccaa

Function

GO: NA

KEGG:

id description
K18196 STIM2; stromal interaction molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU899897 lncRNA upstream 42768 29338594 ~ 29340325 (+) False rbpjb
TU899900 lncRNA upstream 43293 29338594 ~ 29339800 (+) False rbpjb
TU899901 lncRNA upstream 44649 29337786 ~ 29338444 (+) False rbpjb
TU899778 lncRNA upstream 297217 29085649 ~ 29085876 (+) True G790214
TU899775 lncRNA upstream 303023 29079844 ~ 29080070 (+) True G790211
TU900086 lncRNA downstream 69230 29543019 ~ 29543870 (+) True G790493
TU900498 lncRNA downstream 96058 29569847 ~ 29570077 (+) True G790888
TU900523 lncRNA downstream 115455 29589244 ~ 29589523 (+) True G790913
TU900528 lncRNA downstream 118456 29592245 ~ 29592728 (+) True G790918
TU900542 lncRNA downstream 127428 29601217 ~ 29601417 (+) True G790932
XM_036987795.1 mRNA upstream 1424 29354116 ~ 29381669 (+) True tbc1d19
XM_036987790.1 mRNA upstream 42740 29248127 ~ 29340353 (+) False rbpjb
XR_002474771.2 mRNA downstream 808848 30282637 ~ 30286239 (+) False LOC110531891
XM_021615374.2 mRNA downstream 900582 30374371 ~ 30594050 (+) False LOC110531892
XM_021615372.2 mRNA downstream 900582 30374371 ~ 30598347 (+) False LOC110531892
XM_021615373.2 mRNA downstream 900583 30374372 ~ 30591078 (+) False LOC110531892
XM_021615371.2 mRNA downstream 900583 30374372 ~ 30598347 (+) True LOC110531892
TU899899 other upstream 40890 29339981 ~ 29342203 (+) False rbpjb
TU899896 other upstream 40890 29340447 ~ 29342203 (+) True rbpjb
TU896363 other upstream 1895570 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 2003429 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 2969561 26413112 ~ 26413532 (+) True G786496
TU901372 other downstream 808886 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 808886 30282675 ~ 30288163 (+) True LOC110531891
TU903452 other downstream 2122207 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 2279546 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 2648893 32122682 ~ 32124851 (+) False zgc:112271

Expression Profile