RNA id: TU901372


Basic Information

Item Value
RNA id TU901372
length 4424
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC110531891
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 30282637 ~ 30288163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATAGTTAGTATTGCCCGTGAAGGTGAAAATGTATGTTTTCGCCAGCACTTTCAACCAGAGGATTTAGAAACTGATGCCAGGTCACCGAACGTTGAAAAGTCATGCTAATCCATCGATTTTCCCCTTCACTTCAAAGAGGAAGGCATCCATCAGCCAACATAAGTGCAGCAGAAAATAAATCGAGCTGAGGTAACGTAGCTAACGTTACGTACCTAACTAGCTAGTGAACTACATCTGTTTATGTAAACCAAAATAGAGCTCACTAGCTTTCATAATATGCTTGCTGACATTCCAGAGCAAATCAATGTAATTAGCCAGCTGCTATCTTGCGATGTGATTTTTAAGTtcgcaagctaacgttagctttgtTAGGTTACATTAGCTGCAGCCTACCGGACCGTATCTAACcaatatctagctagctaactaactaccgCAGAGGCAAAGGTGGCTATGAGTTCTATTTAGAGTCCGATTCAATCAACATCTGCAGCAGCATCAACATCAAGCTCAGCACCAGGAACTAGTACTAATCCTGCTGCTGATGATGACAACCTCTCCACCAGCTTTAACAGTAGACCCATTGGATGAAAGCTTTCAGCTGGGAACAAGCTCAAGCTCAACATAATCTGACTCGGAAACAAGCCGGGGACAGCCAAAGGAGACTTGCAGTACAAACAAATCTTCTGCAAGAGGTGGGTAGTTAAGAAGGTGTACGAGCCCAGAACCCACTACTTCAGGGAGAGACTTGTCCACCTGACTGTGGAGCAAAGAAAGGACCAGAGAGTTGTCTACAAGGAGCCAGAGTCACAGCTCCCCAAACTCAACATCCCTGCCAACATCGCCACAGCGCCAGAGCCTGCTAAACCCGCTGCCATGACCCAACACAAGACAAGGTTCACCAGCTGAAGAACATTCTGGAACATTAAACCAACACAACATCCCTATTCAGTTAGACTGATGTTGTAGTATAATATAGAATACCTAGTATGCTCACAACGACATTGTGGTAAAGATATTGTTAGCTCTTGTACATATGTTTAACAAGTCAGAcacaaaggatttacttcagagaGGATTTACCCTCATCCACAGAATTCACAAGAGAAagagtgggtaatctgcctttaccgtcggtcctattagccaacgttcaatcattggataataaaatagacaaactatGATCCCGTATattctaccaacgggacattaaaacatgtaatatcttatgtttcactgagtcatggctgaacgactacatgaataacatacagctggcgggttttaaGCTGTATCGGCAGAATAGGACAgccgcctctggtaagacaagggtggcgatctatgtatatttgtaaacaacagctggtgcacgaaatctaatgaAGGAGATAGCTTGTGGTGAGATATTGTGTAGCTAAAGGTAATCCGTCAGCCTATTAATtaggaaaatataaaaaatggcCTATTACCTGGCTATTCAAAATACAAATGGAATTTAATTTTAGAATAACTCCATTAGCCGctctgcacaatcaatgaaccaacagcgttgcctagaccagtggttcccaaactgtggaaCATGCCCCCTAGGGGGGGTGCGATGGGTCAGCAAGGGGGGCACGGGGGTCCCGCACCTCACaaatggaaaaaatatatataataatggaacacagtccAGCTTTGAACTTTTTCTTGAAAGTCGCAATAGTCAAATGCACAAGGAGCAAATTTGAAATTGTTTAGCGTaacatcagttcctcttgtcatgttagtcattgcataccttagtGCTATTTCTAACTTTTCATAAATCAACTtgcccatgtcagctaatgttttCTTATCTAGgtttttagcccatagatattGTAATTTTTTCGTCACTCATTTATGtctatttattttttgtattttaccccccTCTTTGTCCCcaattttgatcttgtctcattgctgcaattccccaacgggctcgggaggcgaCGGTCGAGTGATGCGTCCCCCGAAACCACGCTTCTTAGCACCCGCCTGCTTGATcaagaagccagccgcaccaatgtttcgGAGGAAGCGCCATTCAACTGACGTCctagtcagcctgcaggcacccggccagccacaaggagtcactagaacgcgatgagccaagtaaagcgcCTCCCGGCAAACCGTcgcctaacccggatgacactgggccaattgtgcgccgccctatcggactcccgatcacagccggttgtgatacagcccgagatctaacccgggtctgtagtgatgcctctaatactgtgatgcagtgtcttagaccactgcaccactcgggtgGCCAGGCATTCATTTTTTAGTCACTCAAATTACACAAGAagcattagacatggcaaaatgtatagtaTTGCAAGACAATGTGCTTTTAAACTGCAAAATGTGCTTTGCACCACATGACAAATTGTGTGTAATTGCAGGAAATAAAATTGCTaaattctctccaccaacaagaggggtgtgaacagatTGTGTCATAAACAGTGCTCTTGCCCATAGAAAAAGATGTGGTGCATGCGTGCAGGGGGGGCGCGGGATGTTCTCCAAGTTTGTGAACCCCTGGcctagaccagggatgggcaactttgatgggggtgggagcCACAAAAACGGAACTCATCATAAGGGGCCGCAGTGGCTCATGGGGctgcatacccacatccatacctccaatttaatttaatttttgtGAAATTTGTCCGTGGGCCTACAAAAGGGAGGACTCGGaccgccagttgcccatcccttaCCTACCTATAAGTTCTCTCCCAAACTCATGGATAGAACCTTTGGAGagtagcataaggtaaccagcCCATCCAGTGTGtgtaataatacagtccacactcaaaggtgATTCATAAAATTCATTTAATTTAGGAGTATAGGCCAAACCAATAATgtaccaaatacatttaaatcattaaaaaaaatctgcattGAGTATAATGTGGTAGGCTATGTATTTTATAATGGcacaattattattttaattctATTTTTTTTCTGTCTCGGGCTCATATGCATCCCATATGCATCCCTCATCCCTATGCATATGGGTtttttgaattaatcatcaccttcGAATGCACTTTCGTTATTTTATGTTTTCCAACCTGTtattgaacttctttcttcaaattgatcaatgAGAGTGAGTTGAGCTTTAAAAGCATGATACTGTTTTGATGacaagtgtttgatgtgattttcaattgtatttgatttgatgtcagagtggttagagggacaaaaTACGTGACAAATGTGCTTATCCTCCCACAGACTTTAGACCATGCGTATGCACTGTTTCTAGTGGTTGAAGTATTGCATTGCAAGAAAGCAAAAGCCTAGTAGTAGCCTTGTGCAAATGGGGAATATATGATTACTCCCTTATTCATAACAAAAAAACTGGTATAAATATAAGATGCAATCATTTGCGTTAGTGAGAACATACCTTcataaactgactatcctaccgatccttgatttcggcgatgtcatttacaaaatagcttccaacactctactcagcgaATTGGATGTtgtctatcacaatgccatccgttttgtcaccaaatccccatatactacccaccactgcgacctgtatgctctcgttggctggtcctcgctacatatttgtcgccaaacccacaggctccaagtcatctataagtctttgctaggtaaagctccgtattatctcagctcactggtcaccatagcaacacccacctgtaacacgcgctccagcaggtgtatttcattggtcatccccaaagccacctactttggccgcctttccttacagttctctgctgccaatgactggaacgaattgcaaaaatcactgaagttggagacttatatctcccttaCTAACCttaaagcatcagctgtcagagcagcttaccgatcgctgcagctgtacacagcacatctgtaaatagcccatccaagcaaatacctacctcatcccatatttgtttttgtttttctgctcttatgcacaccagtatttctacttgcacatcctcatctgcacatctatcactccagtgttaattgctaattTGTAAATACTTTGCCAGTCTTTGctaggcctatttattgccttacctccttacttaattAACCTCTTGCCACGAGCAATCCCGGATCCGCgatcgtaatcatagcctcaaacgaattagcataacgcagcggacataaatacccctagaaactacatattttccaccataatttgcaaataaattcataaaaaatcctacaatgtgattttctggattttttttctcattttgtctgtcatagttaaagtgtacctatgatgaaaattacatactttatatacttttttgccccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU901320 lncRNA upstream 74233 30206731 ~ 30208442 (+) True G791696
TU901217 lncRNA upstream 199929 30082527 ~ 30082746 (+) True G791596
TU901214 lncRNA upstream 201024 30081410 ~ 30081651 (+) True G791593
TU901211 lncRNA upstream 202317 30080140 ~ 30080358 (+) True G791590
TU901155 lncRNA upstream 237416 30045021 ~ 30045259 (+) True G791534
TU901702 lncRNA downstream 208101 30496264 ~ 30496933 (+) True G792062
TU901732 lncRNA downstream 239115 30527278 ~ 30620954 (+) True G792088
TU901803 lncRNA downstream 341014 30629177 ~ 30629458 (+) True G792159
TU901804 lncRNA downstream 345049 30633212 ~ 30633411 (+) True G792160
TU901868 lncRNA downstream 428261 30716424 ~ 30723661 (+) False G792218
XM_021615368.2 mRNA upstream 808886 29383092 ~ 29473789 (+) False stim2b
XM_021615370.2 mRNA upstream 808886 29383093 ~ 29473789 (+) True stim2b
XM_036987795.1 mRNA upstream 901006 29354116 ~ 29381669 (+) True tbc1d19
XM_036987790.1 mRNA upstream 942322 29248127 ~ 29340353 (+) False rbpjb
XM_036987792.1 mRNA upstream 942322 29299875 ~ 29340353 (+) False rbpjb
XM_021615374.2 mRNA downstream 86208 30374371 ~ 30594050 (+) False LOC110531892
XM_021615372.2 mRNA downstream 86208 30374371 ~ 30598347 (+) False LOC110531892
XM_021615373.2 mRNA downstream 86209 30374372 ~ 30591078 (+) False LOC110531892
XM_021615371.2 mRNA downstream 86209 30374372 ~ 30598347 (+) True LOC110531892
XM_021615392.2 mRNA downstream 1465019 31753182 ~ 31757502 (+) False LOC110531915
TU899899 other upstream 940472 29339981 ~ 29342203 (+) False rbpjb
TU899896 other upstream 940472 29340447 ~ 29342203 (+) True rbpjb
TU896363 other upstream 2795152 27485794 ~ 27487523 (+) True taf6l
TU896328 other upstream 2903011 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 3869143 26413112 ~ 26413532 (+) True G786496
TU903452 other downstream 1307833 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 1465172 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 1834519 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 1834519 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 1834519 32122682 ~ 32124438 (+) True zgc:112271

Expression Profile