RNA id: XM_021615371.2


Basic Information

Item Value
RNA id XM_021615371.2
length 8483
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110531892
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 30374371 ~ 30598347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtggagagagcgcGCGAGACACAATTGTGAATCGCTCTCACAGTCCAGCAGATAGGTGCTGCAAACGCACGCTGCGTACATGCATGTGTTGAGTGGGCGCTTGGATTGAGAATGCGGGAAAGAAGGAGGATTCTCACGTAATAATTCACCGACATTTTCCAATATCTACATCGGGAATTACAATTGTCCTTgtttgtttcatttttttttattcccTCACTATCAGTTTTTTTGTACTCTATCCGTATTGCTTGCGACTGTGAGAACTAACGTTAACTACTTACGGGCTGCTTGTTATAAGTGAGTGAATGTAGAGAAGAAATCAGAGTGCACGGATGCTGCTTGGATAGGCTGCTGGACACATAATGTGTTGCTTATACGCTGTTTCAAGGCATGATAAGATATTCGGAATCGTTATGAATTCATGACATAGGATATAACCAGACTGAACGGACTGTTAAAGAAACATTTATTCGTTGCTGGAAAAAAGGGGTGAGGATaatcccccccaccccacccacaaaaaaaatgaagaaaagtATAGCGGGTGCACTTGCTCTCATTCACTGCAGTTGAAGCGGTGTTGGAGTGCGTCCGGAGTATGAAGTCTTACACATCCTGAAACGAAGGACTTCAAATTAACCGAGAAGGAAAATTATGTTTAACAAAAACAATAGCAGCAAGTAAACGTCATCCTCATTCGATTCAAGGCTTTATAATCCAGTTAAGACATTGCGGGGAACAATGAGGACTACTGGCGCAGTGGACTATATATGCTACAGTATACTCCTCCTGCAGCTGCTGAATCAGCCCGATGCCAAGCAAGTGTTGCGATATCGCTTGGCTGAGGAGGGACCCGCCGATGTCAGGGTAGGGAACGTAGCCAAAGACCTCGGAATCGTCGCCGGGTCTGGTGAGGTTACGTTTACCCTCGAGTCCGGCTCTGATTTTTTCAAAATAGATAATATAACAGGTGAGCTGACCACTAATGAACGGCGGATAGACCGTGAAAAATTACAGCAGTGCCAAATGATATTTGATGAAAACGAATGTTTCATAGATTTTGAAGTGTCAGTAATTGGACCGGCTCAGAGCTGGGTTGACCTGTTCGAGGGGAAAGTCATTATTTTAGACATAAATGACAACACCCCGTCTTTCCCCTCTCCTGTTCTGACACTGTCAGTGGAAGAGAACAGACCGATTGGCACTCTCTATCTCCTGCCCACTGCCACCGACAGAGATTTTGGCAGGAACGGAATTGAGAGATATGAGCTTATTCAGGACAGCGGGGAGAGCTCCAGGCGCCTGGGTTCGAACTCAGGGGGACGCGGAGTGGACAGCAGGAGATTTGATGAGGGGGCAGCCAGGAGCAGCGTCTTTGAACTGCAAGTTGCTGACACAACTGATGGGGAAAAACAGCCGCAGCTCATCATTAAAGGAGCGCTGGACAGGGAGCAGAGGGACTCTTATGAGCTCACCCTGCGTGTTAGGGATGGGGGCGACCCCCCACGCTCCTCCCAGGCCATCCTGAGGGTGATGATCACTGATGTGAATGACAACAGCCCCCGCTTTGAGAAGGCTGTGTATGAGGCTGACCTGCcagagaacagctcccctggtgCCCCCATCCTGCAGCTGAAAGCAGCTGACGCAGACGTTGGGGTGAACGGTCAGATTGAGTACGTATTTGGTGCGGCCACAGAGTCAGTGCGTAGGCTGCTGAGGCTGGACGAGGGCTCGGGGTGGCTTAGCGTGCTCCATCGTATTGACCGCGAGGAGGTGAGCCAGCTGCGCTTCACGGTAATGGCAAGGGATCGAGGTCAGCCACCCAAAATGGACAAGGCAACCGTGGTCCTCAACATCAAAGATGAGAACGACAACGTGCCTGCTATCGAGATTCGTAAGATCGGACGCATTTTCTTGAAAGATGGTGTGGCCAATGTGGCAGAGGATGTAGTGGTGGACACGCCTATAGCTTTAGTCCAGGTGTCAGACCGCGACCAGGGCGAGAACGGCATCGTGACCTGCACTGTGGTGGGTGACGTGCCCTTCCAGCTCAAACCGGCCAGTGAGATTGAGGGTGAGATGAATAAGAAGAAATACTTTCTCCATACATCAGCCCCGCTGGACTATGAGGCCACACAGGAGTACAACGTGGTCATCGTGGCTGTGGACTCAGGAAGCCCTAGCCTGGCCAGTAATAACTCGCTTATCGTGAAGGTGGGAGACTTCAACGACAACCCACCCATCTTTAGCCAGAACGTGGTGGAGGTGTCCTTTCTGGAAAACAATGCCCCAGGCGAGAGGGTGACCACAGTGCAGGCAATCGATGCTGACAGTGGCAAGAATGCAGAAATCGCCTACTCCCTCGTCTCCTCTGTAAATGGGATATTCTCCATTGATGCAGACAGTGGTGACATCAGAGTAAACACCATTCTGGACAGGGAGCAAACAGAGAGGTATGAGTTCAAAGTGATAGCTAAAGATAAGGGCATGCCCATACTTCAGGGGTCAGCCACTGTGGTGGTCCTGGTGGCAGATAAGAACGACAATGAGCCAAAGTTCATGCAGGACGTGTTCACCTTCTACGTCAAAGAGAACCTAACACCCAACAGCCCTGTTGGCATGGTGACCGTCATTGACGCTGACAAGGGCCAGAACGCTGAAATGAGCCTCTTCatcgaggaagaggaggatatctTCTCCATTGAGAATGACACAGGAACCATTTTCTCCACCATGTCATTTGACCGCGAGCAGAAGACTTCATACACGTTTAGGGTCAAGGCTGTGGACGGTGGAGACCCACCCAGATCCGCCACAGCCACCGTGTCACTTTTTGTGATGGACGAGAACGACAACCCGCCAACCGTCACCTTCCCCATCAACAGCACTTACACTCTCCTGCCCCCCTCCAGCAACGTCAGGACTGTAGTACGAACCGTCATAGCCACTGATACGGACACAGGGATCAACGCTGACCTGAACTACAGCATCATCGGTGGAAACCCCTTCAAACTGTTTGATATTGACGGAGGCAGCGGGGTCATCTCCCTGGTGGGGAAGCTGGAGCAGAAACACTATGGCCTCCATCGACTCGTGGTTCAGGTGAACGACAGCGGGCAGCCCTCCCAGAGCACCACTACCCTTGTGCATGTCTATGTCAATGAGACCCTCTCCAACTCCACCATCGTAGAGGCCCAGGTGGCCAAGAGCCTGGGTACGCCGCTCAATACCAACATCGCTGGTGACCCCAACTACGACCTGGGTAAGCAGCGGCTGAGCATCGTCATCGGGGTGGTCTCGGGCATCATGACAGTCATTCTCATCATCCTCATCGTCGTCATGGCCCGTTACTGCCGCCCCAAGAACAAGAATGGCTATGAGGCAGGCAAGAAGGACCACGAGGACTTCTTCACCCCTCAGCAGCATGACAAGGGCAAAAAGCCTAAGAAGGACAAGAAGAATAAGAAGTCCAAACAGCCACTGTACAGCAGCATCGTTACCATTGAGGCCTCCAAGCCCAACGGCCAGCGCTACGATGGTGTCAACGAGAAGCTGTCGGACAGCCCTGGGATGGGCCGATACCGGTCTGTTAACGGAGGGCCCGGGAGCCCGGATCTGGCCCGGCACTACAAGTCCAGCTCGCCACTGCCCACGGTCCAGCTCCACCCCCAGTCACCCACGGCGGGGAAAAAGCATCAGGCTGTTCAGGACCTGCCCCCTGCCAACACCTTCGTTGGCACCGGAGATAACATTTCCCTTGGATCTGACCACTGCTCTGAGTATAGCAGTCAAACCATCAACAAGTACAACAAACAGCCGTTCCGCCGAGTGACCTTCTCGGTGGTGAGCCAGCCCCAAGACCCCCACCAGCAGGGATCGCTGCAGAGCTGCTACGACAGCGGGCTGGAGGAGTCGGAGACACCCAGCAGCAAGGGCTCTTCGGGGGGCCCAAGGCTGGGTGCGCTGCCCCTGCCCGAGGACAGCTACGAGAGGACCACGCCGGATGGCAGTGTCGGTGAGGCAGAGCATATGGAAAATGACACCCGGCCCTTGCCCGACGTAGCCATGACAGGCAAGTGCACTCGGGAATGCGATGAATACGGCCACTCTGACTCCTGCTGGATGCCTGTGCGCATGTCGCCTGAGCGCCGGCCCAAGACAACCACAACCCAACAACCAAAGCTTTCCACCTTCATGACTGGCGGTGGCAGCGGCAGCAGCCCTCccgagcagcagcagcagcatcctgGCAGCCAGGAAGCCCTGGCCGCCATGTCCAATGGAGACCCCTCCTCCCACGTGATGCTGGGCAATGACCGCAACCGCAACCTGCTCAACAAGAAgacagcctcctcctcctcctcctacgaGGGCTTTGGCTCGCCCAGTTTTAGCCCACCGGGGGTTGAAGAGAGGGTGGTGGGTCACCCCATTGAGGAGATCCCTCTGGCCCCCACCGGGGAGTACAAGCCCTCACCCTGCGGCACGCTCACTCGCCGTGAGGTCTACCTGTGAGGGGGGCGGGGGAAGTAGCGCCATGGTACATAAACATCAACAATATAGTAGGTTACCACAACGACAACAACTAAAGACACTTTTTACTGTACCAAATGTACCTTGGCTGAGCAGGAAAGGTCCAAGGATAACCCTTCtccaagacaacaacaacaacaacatgaaacAATGCTAAAAGCTACGTGGATACAAGCATAATCCCTTTTAGATTTCAGATTCTGACCATATCCTGCAAGAGGAAGAAGAGGGTGGGGCTATTGGTGGGACTCAAAGCGAGACATTGGGTAACTGCTGCTGGCCGGCCAATGGGAACATTACTGCTGCCTGACCAACTCATTTCCATAAAACATGCATGCATTATCTCTCCCTGACCCCACCTCTTAAAGACTGTACTGTACAAAAGAGGATCTTTCTTTATTTTCCGCTCTTTTTCTATAACTGTACTTGTGAACTAGTTTGAGTGTGGCAATGAGATGTGTGACAAAGGACCGATGTCATGCCTTTTGGGGACTTACTGACACTCCCACCCTCATGCAAGCatcatatagcctacatacagtaatgtGTCATATATCACATCACGTGTCATGACACCTTTGTGCTACTCACTCTGGATTCTGGATTCTGCATTTCAACAGTTTATGATTCAATGTTGCTTTCTCATTCAAAAAGAGACCCAAACACAACCAAACAACAATAGACTGCGAAGGCTACTAGCATGGCATCATCGTTAACATTTGGGAAAgactaagctttaactttctgTCCTGTGGATGAGACTGTGTGTATCGCCTCATTCATAGGAGAATATAATTAAGAAAATGGACTAAATGGAGCCAATGTGGTTGGCAATGTCCAAGCCACAGTAGTCCCTGACCCACAGGGTGAATGAGGAAATGATGTCGAAGTATGCTTATTTACCAGTGTGCATATAATACTCTCTTTGCCTCTTTCATAGACACCTATAGAAGTGAACATTGGACATATACATCGATTCAGACCAATACTTTAAAGCTcactttccccttctctctctctatctttggaTGGCCTGAAAGTTGAAGACAAAAAATACATTGGAGATGCAAGTTTCTATCTAGAACCATGACCAATCTGAACTGGTTGGCGGTCTTTGCTTGAGTTGCGTAATATGTTTGTACGTAGTTGTGCATATATTGATTCCTATTCAGATGAAAGTTTCCCACAGAGACAAGCAGACACAAATTCACACAAATCAAGACACAGCTAACATGTCATGGTAGATTTGAGTTGAGTTAGTTGAGAAAAATGCTGGGGATGTAAAAGCATGCATGATAGGGTAGGTTGAGCTGGTCGAGGAAAGCTATGTTTTGACGTTTTTTCCGTTAACCTTATTTTGTGTTAAGGTGTGTGCTAGAATGAGCAATAAATACCATATTGTACACAACACTGACATGACCACACTCTCTATCACATAATGGTAAGATTAGTACTCTAACAAGGTCCATGTTCAACTACCCAGATGTCACCAGTGGTGGAAGTACATTTCCATACGGCACATCTCAATGAATTACAATCGAAAATACCtattgatgtacagttacaaagAGGCGTGGGGAAAAAGACACCAGTTTAGCATCTTACAAGTTAGTATGTGAGAGAAACCAAAGCATAGGAAACAACAAACTGGCATGAAGGTACATGGGAGaaactacagtactactacaagTTGCTTTAAATACATGCATATGTGTAAGTGTATAGTGAGAGCATAGGTTGAATTGAGCACGGGTGCGACGTGTAGGCAAACGTGTAGGCATGTAGGCAAACTATTTTGGAcaaccacatacacacagaaacacacacaatatGAAGACATTGTGCCTCCTTACCCATCGCTAGTGGTCTTTTTCACTGGTGAGTAGGCACAAGGTCTTGCCACCATAACCGAGCAAAAGAATATCAGATAAATATCAGATGCAATGGGAACCCTTTtgtatgttagctaaccctttggTTCAAAACAGACTGCTTTTTGGCAGTCCACCAATCTGTAAGTACTACTTGTCGTTCAAAGAAGTGTTCCTATGCTTATAAACGGTATACATACGTACTTTTTATTGCATGTTTAAAGGGAATTTACTTACTCAGAAGGAGAAAAACAAATTAATggaaaatacacaaaaaaaactTACCCTGTGAACATGGATGTCCATCTTGTTGCTTGCTTTTGTTATACCTAAACTGACATTAGCCATGTAGTATGTATGACTTAGTATATCAGTTTGAGGAGGAAGAAATGTATGTTTATTTAGCATATTTCTTTAACTTTCCATCATATTTCTTTGATTGTTTCTTTCATTCCTGTCAGACAAATTTCCAGACCGTTCCCCATTCCACTGAACAAACCTTACAGTTATAACACACCTTCAGTTCAAGGTTGCTCACCTGTAATGTCTGAACTTACATAGTACAGTAAGACGATTTGCAACTTTGTACTGGCATTGCATTTCCatccccctttttctctctctcttttttttctatttgATATACAGAACCTTGGAAATAATCATCtttatgtgttttatttttttgtcatattTTCTGTTGACAATTTGTATATTTAGAGTGCTTCTGTAAAaaagaaaaatgtaaaaaaaaactaaactatAGAGTGAATTCAAAATATGCAATTGTGCCTTTTTATACCAATTGGTATGATTCAATGTTGGTTTGGAATAGTACAAAACCAGTTATGCTGACATGCTTTCTAAAAGTAGTGGGGATGGTATTTATGTCAAATATTAAATAACTCCTGAAGATTCTTATACGATAGAGGAAAAATACAATGACTTTCTGGCTTCTCCGGATGTGACCAGTCAAATGTCGGTAAAAGCctgatacagtagatacagtgtGGTACATTGATACAGAGTGGTCTTGATGTGGTCTTTATGTGGAATGTTCAAGGTATGAATCTCCATTCCTAGCAGTGTGGTTTCACCAAATTACAACTTTTTGTACTGCTTAATATTAGTAATAATGACAATATATTCTAACTATTATTATCCTATGGTGTTCTGCTAATGTACATGTTCAGTGCAACAACCTTATGTGCATGAAACACTCTTTCGGATTAAACACATTGGAGCTGGTAGAAGAAAAACTTTGAGACATTTGACTGTTCAGGATGCGAGGAAGCCTGGAATTGCTAATATGGAGGTTGAAAAAAGTTGCAAGGTAGAGATGCTGACAGAATACACACCTCAGGATGTACAGCAACCCCtaatacacactcacaaacacacatttacAACACATACATTACAAAAAAAGTCAACAAAGTATTGGAAACAACAGAGAAGTAGTGTAGTAGGTTCTCGTTGCGTTGTAACATAAAGGAAATTGCATGTCTTTTCGAGAAAGACCGAGAAAGGGATATAGAGGGAGGTAAGTGTTATGAGCTTTTTTGATTAACTCTTTACTCAAACATTCAATATGCTACTTGTGCTTACTACTGAATGTACAATATTATCTGATAGAAAAGAAACAGGGAGAAAATAAATTGTCTTTCCTTGACCTGGTAATCCACAGATGACTGTCAAGGTTGGTTTTtagaaaaatatttaaaaaagtatatttttGCTACCTGAGGTGTATGTTTAGTCAGCTCTCTCTTCTATTAGTTGTTCAGCATTCACAGTCTGTGATGAAATTTGTGATATTAACCATAAACTATTTGTCCTGCGACTTGGATGTTGATATGGAAATTGAGGAAACAGTTTATCATTGTTTATTATGATTCACTATGCACGCAGCTTAGCtgaacatggcaaaatgtattgaACGCAAGCCCACTTCTATTTATGGAATCTTTTACATAATGTAATTTGCTTTTGTACAGGTTTCTGTAAATAAACTGCTTGTCATTTTCGTCTGTGCAGAAATTAAAATATAACATGGTAAAACTATATGGTA

Function

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU901320 lncRNA upstream 165930 30206731 ~ 30208442 (+) True G791696
TU901217 lncRNA upstream 291626 30082527 ~ 30082746 (+) True G791596
TU901214 lncRNA upstream 292721 30081410 ~ 30081651 (+) True G791593
TU901211 lncRNA upstream 294014 30080140 ~ 30080358 (+) True G791590
TU901155 lncRNA upstream 329113 30045021 ~ 30045259 (+) True G791534
TU901803 lncRNA downstream 30830 30629177 ~ 30629458 (+) True G792159
TU901804 lncRNA downstream 34865 30633212 ~ 30633411 (+) True G792160
TU901868 lncRNA downstream 118077 30716424 ~ 30723661 (+) False G792218
TU901869 lncRNA downstream 118077 30716424 ~ 30719136 (+) True G792218
TU901874 lncRNA downstream 128828 30727175 ~ 30727534 (+) True G792223
XR_002474771.2 mRNA upstream 88133 30282637 ~ 30286239 (+) False LOC110531891
XM_021615368.2 mRNA upstream 900583 29383092 ~ 29473789 (+) False stim2b
XM_021615370.2 mRNA upstream 900583 29383093 ~ 29473789 (+) True stim2b
XM_036987795.1 mRNA upstream 992703 29354116 ~ 29381669 (+) True tbc1d19
XM_036987793.1 mRNA upstream 1034019 29321604 ~ 29340353 (+) False rbpjb
XM_021615392.2 mRNA downstream 1154835 31753182 ~ 31757502 (+) False LOC110531915
XM_021615394.2 mRNA downstream 1301713 31900060 ~ 31992396 (+) True LOC110531917
XM_021615397.2 mRNA downstream 1404519 32002866 ~ 32027214 (+) True LOC110531918
XM_036986938.1 mRNA downstream 1479271 32077618 ~ 32078723 (+) True LOC118965935
XM_021615407.2 mRNA downstream 1513445 32111792 ~ 32114299 (+) True LOC110531922
TU901372 other upstream 86209 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other upstream 86209 30282675 ~ 30288163 (+) True LOC110531891
TU899899 other upstream 1032169 29339981 ~ 29342203 (+) False rbpjb
TU899896 other upstream 1032169 29340447 ~ 29342203 (+) True rbpjb
TU896363 other upstream 2886849 27485794 ~ 27487523 (+) True taf6l
TU903452 other downstream 997649 31595996 ~ 31596918 (+) True G793757
TU903612 other downstream 1154988 31753335 ~ 31756445 (+) True LOC110531915
TU904135 other downstream 1524335 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 1524335 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 1524335 32122682 ~ 32124438 (+) True zgc:112271

Expression Profile