RNA id: LOC118965933


Basic Information

Item Value
RNA id LOC118965933
length 971
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC118965933
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 30832726 ~ 30834388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTCATCCTCCCGACATCTCCCTTCTACCTGTCCCCTCCTTACCTCTATCAACCTTTTGAACTTTCCCTatcccctcccactcacaaggcagatctatccgctgccttCGACACCATGAACCATcagctcctcctctccaccctctcagggctgggtgtctcaggctcggcacactcttggattgcatcctaccatATGACGCTCAACTCATTTTCTCCTTCCCTGTTCGTGACACACATCTCTGCGTTCATATCAGATATCTTaccttggatgtcggcccaccacctcaagctcagaCTCGGCAagacggagctgctcttcctcccggggatGGCCTGTccgctccaagacctctccatcacagttgacaactccacagtgtcccCCTCCctgagtgcaaagaaccttgatGTAACTCTGGgcaacaccctgtcattctctgcaaacatcaagcAGTGACTCGCCCCTACTGGTTGATGCTCCACAACATTCATAGAGTACAACCCTACCTCAGACAGGAAGTGGCTCGGGACCTAATCTAGTCATCTCCCATCTGGACTTCTGCAACTCGCTGTTGTCTGGGCTCACCACTTGTGCCATAAAACTCCTGCAACTTTTCCAGAAAACGGCAGCtcgcctggtgttcaaccttctcCCATTCAacctcctccgcacactccactggcttccagccAAAGCTCGCATCCACTAAAAGACCATGGTACTTTCCTAccgagcagcaagaggaactgtgCCTCCCTACACAACTGCTCAAAACCTACACCCtaacccgagcactctgttcttccacctctggtctcttggccctcccacccctatggGAGGGCAACTTCCACttagcccagtccaagctcttctctgtcctggcaccccagtgGTGGAACCAGATTccccctgatgctaggacagcagagtgtgtccccaccaccaccattgcTGATAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU902217 lncRNA downstream 109083 30713151 ~ 30723643 (-) True G792555
TU902161 lncRNA downstream 207977 30624529 ~ 30624749 (-) True G792500
TU902159 lncRNA downstream 210326 30622192 ~ 30622400 (-) True G792498
TU902093 lncRNA downstream 289264 30528321 ~ 30543462 (-) True G792433
TU901560 lncRNA downstream 522039 30310478 ~ 30310687 (-) True G791925
TU902415 lncRNA upstream 60639 30895027 ~ 30895265 (-) True G792745
TU902417 lncRNA upstream 61502 30895890 ~ 30896113 (-) True G792747
TU902419 lncRNA upstream 61926 30896314 ~ 30896537 (-) True G792749
TU902470 lncRNA upstream 96172 30930560 ~ 30930780 (-) True G792799
TU902581 lncRNA upstream 98741 30933129 ~ 31023128 (-) True G792905
LOC110532982 mRNA downstream 471934 30359807 ~ 30360792 (-) True LOC110532982
XM_021615366.2 mRNA downstream 1479127 29344381 ~ 29353599 (-) True LOC110531887
XM_036987788.1 mRNA downstream 1658138 29140350 ~ 29174588 (-) False LOC110531884
XR_005053222.1 mRNA downstream 1658138 29140350 ~ 29174588 (-) True LOC110531884
XM_036987789.1 mRNA downstream 1663795 29140350 ~ 29168931 (-) False LOC110531884
XM_036986936.1 mRNA upstream 203690 31038078 ~ 31040215 (-) True LOC118965934
LOC110531151 mRNA upstream 535095 31369483 ~ 31494494 (-) True LOC110531151
XM_021615393.2 mRNA upstream 938579 31772967 ~ 31780212 (-) True LOC110531916
XM_021615398.2 mRNA upstream 1258806 32093194 ~ 32102718 (-) True LOC110531919
XM_021615406.2 mRNA upstream 1279916 32114304 ~ 32121299 (-) False slx1b
TU901919 other downstream 474762 30315310 ~ 30357964 (-) True G792267
TU900193 other downstream 1683709 29131374 ~ 29149017 (-) True G790598
TU900144 other downstream 1763539 29068852 ~ 29069187 (-) True G790551
TU900128 other downstream 1783482 29048898 ~ 29049244 (-) True G790535
TU900103 other downstream 1788919 29043436 ~ 29043807 (-) True LOC110531881
TU903165 other upstream 569094 31403482 ~ 31403869 (-) True G793472
TU903182 other upstream 584067 31418455 ~ 31418973 (-) True G793489
TU903541 other upstream 826851 31661239 ~ 31662198 (-) True G793842
TU904054 other upstream 1191683 32026071 ~ 32028268 (-) False G794311
TU906814 other upstream 3216671 34051059 ~ 34057549 (-) True G796733

Expression Profile