RNA id: XM_021615397.2


Basic Information

Item Value
RNA id XM_021615397.2
length 1324
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110531918
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32002866 ~ 32027214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTCTTAGACTAACATCAAACATTCAAATATCCGTGCTTTGCCAGTGACATGGGACATAGTAGTCACGGTGGACTTTTCATTCGCAGCGACAGACGGCAACAAACACGCCAAGGAAAGGaaatatcacagtcaaatatgaACCGAATATGCTACCTTCACTTTTCGGATGGTTTGAACTTTTATCCGTGAATTGTTGATACTACAGCGAAAGGGTGCCCACACCTTCAGTTAGCGCGACAGCTTCACTGTCCAGTTGGCCAGATGGGATGCCAATGCTGTAAGATGATTAAAAGAAATAGGGACCCGGCAGAGGGCTCTCTCTACCAGCCCCACCACCTCCCAGCAGACGGCGGAGACCAGTCCAACAACAAGCAGAAGCAGGACTTTCACAACCTGGGCTTCAGCAACAGCAACAAGTACAACGATGGAGAAGATGGAGGACGAGGCCTTAAGCTGGAGATCGACAACAACCAGATCAACAGGCTTCACGCCGTGCCCGCCAACCcagagagggggcaggggagaGGGCAGGGAGTCAAGCCTTGGGCAGGggaggttggtggtggtggtaggggtctGTATATCCTCCATCCAGAGGGCCAGGTTCCAAGACGAGATCCATCTAAGGGCCCCAGCCAAGTTCCAATCTACCCTAACACACTCTCCCTGGATCATAGTCACCATCTGACACATTTGGGTGACAATGACCCCCACAAGATTAGGATGTTCCGAAATAGCTCGGACCCCTCCTGGCCCGGTGTGGGGTGCTACACCTCGTTGACGGATGAGCTGGATGAGGGGGTGGGGGGCACAACTGAGTACCTGTGTGACACAGGGGATGAGGAGAGCGTCCTGTCTGCGGATATTCCAACTAGTACAACTAGCCTGTCCTCGGCAGACACGAAGGATGATAGGAGCGCGCCGGACGCCACTACCGTAGAGAGCGGGATCGGGATCTCGGTGACGAAAAGCGAAGATGAGGGACGGGAAGAAGATGACGTGTATCACATCACAGACTCTATGGTGGCGGAAGCTCTAGCGGCTCTAGATGCGGCAACCGCCGGGGAGGACTATGAGGACTAACTCTTTAAAAACTCTTAAATATTTTCTACAAGGCCTCTTACTATTCCAAAAGCACAATCTAACTTCGAAATCTATTCAGCTTCAATATCTGCTGCTTTTTTTACTAAAATATGGATTTATTTTTTAACATACTGTAGATCATGCATATTTGTCTTGTGAGTCACATgggcatacagtaccagtcaaaagtttatttatttttactagtttctacattgtagaataatagtgtagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU903899 lncRNA upstream 79906 31922734 ~ 31922960 (+) True G794165
TU903891 lncRNA upstream 90066 31912592 ~ 31912800 (+) True G794157
TU903876 lncRNA upstream 104807 31897844 ~ 31898059 (+) True G794142
TU903875 lncRNA upstream 105255 31897388 ~ 31897611 (+) True G794141
TU903864 lncRNA upstream 111672 31890994 ~ 31891194 (+) True G794130
TU904062 lncRNA downstream 13156 32040370 ~ 32040643 (+) True G794318
TU904127 lncRNA downstream 77314 32104528 ~ 32127935 (+) True G794377
TU904167 lncRNA downstream 136342 32163556 ~ 32163962 (+) True G794415
TU904169 lncRNA downstream 140166 32167380 ~ 32167653 (+) True G794417
TU904170 lncRNA downstream 140490 32167704 ~ 32167973 (+) True G794418
XM_021615394.2 mRNA upstream 10470 31900060 ~ 31992396 (+) True LOC110531917
XM_021615392.2 mRNA upstream 245364 31753182 ~ 31757502 (+) False LOC110531915
XM_021615372.2 mRNA upstream 1404519 30374371 ~ 30598347 (+) False LOC110531892
XM_021615371.2 mRNA upstream 1404519 30374372 ~ 30598347 (+) True LOC110531892
XM_021615374.2 mRNA upstream 1408816 30374371 ~ 30594050 (+) False LOC110531892
XM_036986938.1 mRNA downstream 50404 32077618 ~ 32078723 (+) True LOC118965935
XM_021615407.2 mRNA downstream 84578 32111792 ~ 32114299 (+) True LOC110531922
NM_001160518.1 mRNA downstream 95545 32122759 ~ 32124753 (+) False zgc:112271
XM_021615423.2 mRNA downstream 467276 32494490 ~ 32498602 (+) True rpl34
XM_021615424.1 mRNA downstream 492864 32520078 ~ 32539651 (+) True ostc
TU903612 other upstream 246421 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 405948 31595996 ~ 31596918 (+) True G793757
TU901372 other upstream 1714703 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other upstream 1714703 30282675 ~ 30288163 (+) True LOC110531891
TU899896 other upstream 2660663 29340447 ~ 29342203 (+) True rbpjb
TU904135 other downstream 95468 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other downstream 95468 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other downstream 95468 32122682 ~ 32124438 (+) True zgc:112271
TU904700 other downstream 474633 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 475182 32502396 ~ 32502749 (+) True G794893

Expression Profile