RNA id: XM_021615412.2


Basic Information

Item Value
RNA id XM_021615412.2
length 1829
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110531924
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32217143 ~ 32220999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACTGTGTATGACTATTCTCTATTAATTCTCTTTTCACAGGCTCACACCTCTGTCTTtatatttaaattacattttatgATAAGGCTAGCAATCTCTCCCAACGTGtactatacagtatgtaattCTGGCCTCTGTCAATGGAGCAGATTTGCTTTGAGCCAACATTTGAAAGGGCTGACTGGAACCTACCATCCTATACATTGTACAGTGTGTGAGAGACCCTGCTTGGCGAGGGGCTTTGGAGCAGGCTGACTGGACAGAGCCGTTGGGACCGAGGCTGTGTGAAAGGAAGGGTGGAGTTTCCACATCGCATTGAGTACACACACTGCTGTCTGCATCACTGTGCAGTACCGCCAGTCCACTGGAGAGGAGTGTcatagaaggggaggggggttgCACAACAGCATACAGGCCGGCACAGGCTACATTACtattgagagggagggatgagaatGCTGAATCAGTGAAACTGCATGAAAGccagggagagggtgggagagggtgaactgcaggagagagggaagggaaagaTAGCCGCAAGGGTGAAAGTTCATAGGTTAAACGTTCACGGTGAGCTTGAGGTGGCCGTACACCTTGCTGCAGACCAGGAAAGGAAGCCAAGATGGAAGGAAGGGAGGTGGTGTTGCCGACTGTGTCCCGCGTTGCACTGTGTGGTGGTACCCATGGCAATGAGCTGTCAGGAGTGTACCTGGTGAGAGAGCGgctgaagaggaagaggaaggtggAAGAAGAAGACCACATCTCCGTGGTGACCGTGATGTCCAACCCGCGTGCTGTCCAGCAGTGtcggagatacacagagacagatcTGAACCGCTGCTTCACCCATGCCACCCTtagtGGGCCTGTGACAGACAAAACCCCCTATGAGATAGTCCGGTCCCAGGAGCTGAACACCCTGCTAGGTCCTAAAGGTAGTCCAGAGgccatggacctggtgtgtgacCTCCACAACACAACCGCTAACATGGGCCTGTGCCTCATCGCCTACTCAGACTGTGACTGGATCTCTCTTCACATCTACAGATACCTGCAGAGACAAATGTCTGACATACCTGTGAGGTTCATTCACTTTGACCTTCCCCTCAATGAAGCATATTCCCTCGATTCTGTAGGCAAACATGGCTTTGCGATTGAGATTGGTCCTCAGGCCCATGGAGTAGTCAGGTCCAATATTTTATCCACAATGCAAGAAGGGGTCCAGCACATGCTAGAATGGGTCCACCTCTTTAACTCAGgtACCCAATTTGAAGGAGGAAAAGTGGATGTGTACACCATGGTGAAAAATGTGGACTACCCAAGAGACTTTGAGACCCACGGTATTACAGCCGCCATTCATCCTCAACTCCAGgatCGGGACTTCTGCCTCCTCCGACCCAATGACCCTGTGTTCCAGACTTTCTCTGGAGAGACACTAAAGTACAAAGGGACTGAGCCACTCTATCCATTCTTCATTAACGAATGTGCGTACTATGAGAAGGGCATAGCTCTCTCCCTTGCAAGACAGAGGAGTGTCGGGATACCATCCATCCGAtcggagagagaaggagaacaggGAAAGAGGAAAAGTTCAGCAGATGAAATGGAGGAGGAAGAAACAATTAAAGGGGAAATGGAGGGGGAAGGCTATCAGAAGCTAATGGAATATGGAGAGGAGAGTGATTCACTAAATGGACAACACAACTGAGAGCTAATTTCAAGTTCTTGATATGAAttgtggataaaaaaaaaaaaagttatgtaAAATGAGACACGTTGATCAAATGTTATGAActtcaaataataataaaaatcctTCATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904329 lncRNA downstream 1673 32215255 ~ 32215470 (-) True G794557
TU904309 lncRNA downstream 45217 32171839 ~ 32171926 (-) True G794537
TU904278 lncRNA downstream 92371 32122673 ~ 32124772 (-) True G794508
TU904052 lncRNA downstream 188698 32027892 ~ 32028445 (-) False G794311
TU904048 lncRNA downstream 188875 32027892 ~ 32028268 (-) False G794311
TU904302 lncRNA upstream 1078 32222074 ~ 32222750 (-) True LOC110531926
TU904335 lncRNA upstream 3953 32224949 ~ 32225363 (-) True G794560
TU904352 lncRNA upstream 37254 32258250 ~ 32258482 (-) True G794574
TU904358 lncRNA upstream 46393 32267389 ~ 32267630 (-) True G794579
TU904361 lncRNA upstream 48504 32269500 ~ 32269837 (-) True G794582
XM_021615409.2 mRNA downstream 15973 32178279 ~ 32201170 (-) True LOC110531923
XM_021615408.2 mRNA downstream 15974 32178279 ~ 32201169 (-) False LOC110531923
XM_021615410.2 mRNA downstream 15986 32178279 ~ 32201157 (-) False LOC110531923
XM_036987799.1 mRNA downstream 23972 32178279 ~ 32193171 (-) False LOC110531923
XM_036987798.1 mRNA downstream 94974 32114304 ~ 32122169 (-) True slx1b
XM_036987801.1 mRNA upstream 1131 32222127 ~ 32239463 (-) False LOC110531926
XR_005053223.1 mRNA upstream 20011 32241007 ~ 32243922 (-) False LOC118966025
XR_005053224.1 mRNA upstream 20011 32241007 ~ 32243922 (-) True LOC118966025
XM_021615417.2 mRNA upstream 53258 32274254 ~ 32447901 (-) False LOC110531927
XM_021615421.2 mRNA upstream 53258 32274254 ~ 32447901 (-) True LOC110531927
TU904054 other downstream 188875 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 554945 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 798170 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 813274 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 1859179 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1830063 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 2648959 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 3133223 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 3164857 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 3271030 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile