RNA id: XM_021615423.2


Basic Information

Item Value
RNA id XM_021615423.2
length 489
RNA type mRNA
GC content 0.50
exon number 5
gene id rpl34
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32494490 ~ 32498602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGAGGAAATATCCGGTGGTGAGAAAACTTAACATTTCAGAGCAACTTCTTTGGTTCTTCCTCTTCCGGTAACGGTAATATCAGGTATCAACATGGTCCAGCGCTTGACTTACCGTCGTAGGTTGTCCTACAACACTGCCTCCAACAAAACTAGGCTGTCCCGGACTCCTGGTAACCGCATTGTGTACCTGTACACCAAGAAGGTGGGCAAGGCCCCCAAGTCCGCATGCGGAATCTGCCCTGGTAGACTGCGCGGAATCCGGGCGGTGAGACCCCAGGTCCTGATGAGGCTCTCAAAAACCAAGAAGCACGTCAGCAGAGCCTACGGTGGAGCCATGTGTGCCAAGTGTGTGCGCGACCGGATCAAGCGAGCTTTCCTGATTGAGGAACAGAAGATCGTTGTCAAGGTTCTTAAGGCACAGGCACAGAGTCAGAAATCTAAGTAATTGTGTATTTGTACTGCTACAATAAAAGTCATTCAAGTCCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02915 RP-L34e, RPL34; large subunit ribosomal protein L34e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904698 lncRNA upstream 244 32494034 ~ 32494246 (+) True G794890
TU904657 lncRNA upstream 13589 32480669 ~ 32480901 (+) True G794871
TU904646 lncRNA upstream 18167 32476120 ~ 32476323 (+) True G794860
TU904637 lncRNA upstream 26128 32467902 ~ 32468362 (+) True G794853
TU904631 lncRNA upstream 28917 32465271 ~ 32465573 (+) True G794847
TU904702 lncRNA downstream 5156 32503758 ~ 32504005 (+) True G794894
TU904720 lncRNA downstream 42565 32541167 ~ 32542273 (+) True G794912
TU904692 lncRNA downstream 62915 32561517 ~ 32562743 (+) True G794884
TU904741 lncRNA downstream 128956 32627558 ~ 32651727 (+) True G794932
TU904808 lncRNA downstream 222018 32720620 ~ 32720875 (+) True G794998
NM_001160518.1 mRNA upstream 369737 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 380191 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 415767 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 467276 32002866 ~ 32027214 (+) True LOC110531918
XM_021615394.2 mRNA upstream 502094 31900060 ~ 31992396 (+) True LOC110531917
XM_021615424.1 mRNA downstream 21476 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 536343 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 536849 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 543990 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 545401 33044003 ~ 33044074 (+) True trnag-ucc-7
TU904135 other upstream 369639 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 369754 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 370052 32122682 ~ 32124438 (+) True zgc:112271
TU903612 other upstream 738045 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 897572 31595996 ~ 31596918 (+) True G793757
TU904700 other downstream 3245 32501847 ~ 32502355 (+) True G794892
TU904701 other downstream 3794 32502396 ~ 32502749 (+) True G794893
TU904694 other downstream 85004 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1622820 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2057329 34555931 ~ 34556622 (+) True G797056

Expression Profile