RNA id: XM_021615424.1



Basic Information


Item Value
RNA id XM_021615424.1
length 1232
RNA type mRNA
GC content 0.41
exon number 4
gene id ostc
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32520078 ~ 32539651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTAAGCGAAACATTTGAAGGATAATAAACTGTGGTCACATGTCAGTTCAGATTGTCTTCAAGATGTGTATATAGAATAGTTATATTAAATATGAAATAACATTTCAGTGCATGAAATTCATTATTTGTGATTAAAAAGTATAGTATTTGCTTAGAAGTGTATCTACTAACTAGATTTTCGGTACTTCCTGGACACGTCGTCGTAGCAGCCAGACATCTCAGTTTACCTGAAGAGTAAATTCGTATTGAATTAGCAATGGAGACATTATACGGTGTACCTTTCGCAGTGTTGGAATGTCCTAATATAAAACTCAAAAAGCCATCATGGCTGCACATGCCGTCGGCTATGACAGTCTATGCGATCGTTATTGTATCGTACTTTCTCATCACTGGAGGCATCATCTACGATGTCATCGTGGAACCACCTAGTGTGGGTTCAATGACCGATGAACATGGGCACCAGCGGCCTGTCGCCTTTTTGGCATACAGAGTGAATGGCCAGTACATCATGGAAGGGTTGGCCTCCAGTTTCCTCTTCACCATGGGAGGCTTGGGCTTCATAATCCTGGATCGCTCGAATGCCCCAAACATCCCTAAACTCAACCGCTTCCTTCTGTTGTTCATCGGTTTTGTCAGTGTCCTGCTCAGCTTCTTCATGGCCAGAGTGTTCATGAGAATGAAACTGCCTGGGTACCTCATGGGTTGAAGATGGACAAAACACATTACGAAGACAGAATGGTGAAGGACTGCCAAAGATTTAAGCTTCAATTGATTTAAGCTAGCCTAAAATGTTATGATAATACAGATTTAAATTGCAAATAAAGAATTGACAGTAACATCTGTCCCTGGCAATAAGCCTTTGACCATGTTTGAGTGATGTGACATTTAATACAATGTGCATCTCAATAGTCGAGGCTTCCTATCCTCGTCTCCTTTCCTTCCACTAAATGGTGCGATGGAATTCCCTTACAGGCTGTATTGCTAACCTGTCTTCAGTTCAGTAATGCAGATGGCGAGAATGTGGAGACAAAGCCACTATAGACCATTGAGATGCACCCATTGGAAGGAGGGACACTTTCCTGATTATAAATCTGAATGAGCAGTAAATTTGGGGGTTGTTGGAGTTATTGATAAGTAATGTTTTCTAGACCATTCTATCTTCCTAAATGCCTTCCAACATGTCACTGTTGTGTCTATTAGGAActtaaataaatgttatttcCAGAAAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU904702 lncRNA upstream 16073 32503758 ~ 32504005 (+) True G794894
TU904698 lncRNA upstream 25832 32494034 ~ 32494246 (+) True G794890
TU904657 lncRNA upstream 39177 32480669 ~ 32480901 (+) True G794871
TU904646 lncRNA upstream 43755 32476120 ~ 32476323 (+) True G794860
TU904637 lncRNA upstream 51716 32467902 ~ 32468362 (+) True G794853
TU904720 lncRNA downstream 1516 32541167 ~ 32542273 (+) True G794912
TU904692 lncRNA downstream 21866 32561517 ~ 32562743 (+) True G794884
TU904741 lncRNA downstream 87907 32627558 ~ 32651727 (+) True G794932
TU904808 lncRNA downstream 180969 32720620 ~ 32720875 (+) True G794998
TU904809 lncRNA downstream 182848 32722499 ~ 32722823 (+) True G794999
XM_021615423.2 mRNA upstream 21476 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 395325 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 405779 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 441355 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 492864 32002866 ~ 32027214 (+) True LOC110531918
trnag-ucc-3 mRNA downstream 495294 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 495800 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 502941 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 504352 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 507160 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904701 other upstream 17329 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 17723 32501847 ~ 32502355 (+) True G794892
TU904135 other upstream 395227 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 395342 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 395640 32122682 ~ 32124438 (+) True zgc:112271
TU904694 other downstream 43955 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1581771 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2016280 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2825337 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3773478 36313129 ~ 36316805 (+) True G799053

Expression Profile