RNA id: trnap-agg-9


Basic Information

Item Value
RNA id trnap-agg-9
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-9
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33029737 ~ 33029808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGcttgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905361 lncRNA downstream 554 32971460 ~ 33029183 (-) False G795420
TU905315 lncRNA downstream 554 33011371 ~ 33029183 (-) False G795420
TU905353 lncRNA downstream 554 33011371 ~ 33029183 (-) False G795420
TU905334 lncRNA downstream 554 33017050 ~ 33029183 (-) True G795420
TU905346 lncRNA downstream 2504 32984211 ~ 33027233 (-) False G795420
TU905411 lncRNA upstream 2543 33032351 ~ 33034755 (-) True G795449
TU905418 lncRNA upstream 16472 33046280 ~ 33049438 (-) False G795456
TU905421 lncRNA upstream 16472 33046280 ~ 33066485 (-) True G795456
TU905407 lncRNA upstream 33362 33063170 ~ 33068719 (-) True G795448
TU905426 lncRNA upstream 66342 33096150 ~ 33098013 (-) True G795461
XM_036987806.1 mRNA downstream 73663 32599367 ~ 32956074 (-) False LOC110531933
XM_036987810.1 mRNA downstream 73663 32599367 ~ 32956074 (-) False LOC110531933
XM_036987814.1 mRNA downstream 73663 32599367 ~ 32956074 (-) False LOC110531933
XM_021615426.2 mRNA downstream 73664 32599367 ~ 32956073 (-) False LOC110531933
XM_036987803.1 mRNA downstream 73664 32599367 ~ 32956073 (-) False LOC110531933
trnap-agg-10 mRNA upstream 1313 33031121 ~ 33031192 (-) True trnap-agg-10
trnap-agg-11 mRNA upstream 2701 33032509 ~ 33032580 (-) True trnap-agg-11
trnap-agg-12 mRNA upstream 4086 33033894 ~ 33033965 (-) True trnap-agg-12
trnap-agg-13 mRNA upstream 6001 33035809 ~ 33035881 (-) True trnap-agg-13
trnag-ucc-5 mRNA upstream 6909 33036717 ~ 33036788 (-) True trnag-ucc-5
TU904054 other downstream 1001469 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 1367539 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1610764 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1625868 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2671773 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1021251 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 1840147 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2324411 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2356045 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2462218 35492026 ~ 35521332 (-) True LOC118966032