RNA id: trnag-ucc-3


Basic Information

Item Value
RNA id trnag-ucc-3
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-3
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33032239 ~ 33061120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccagccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905376 lncRNA upstream 2764 33029550 ~ 33032181 (+) False trnag-ucc-19
TU905010 lncRNA upstream 5764 33010877 ~ 33029181 (+) False G795141
TU904964 lncRNA upstream 5764 33016479 ~ 33029181 (+) True G795141
TU904967 lncRNA upstream 9667 32971724 ~ 33025278 (+) False G795141
TU904984 lncRNA upstream 9667 33009469 ~ 33025278 (+) False G795141
TU905384 lncRNA downstream 11264 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905381 lncRNA downstream 26622 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905379 lncRNA downstream 28070 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905391 lncRNA downstream 71233 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 81191 33116207 ~ 33123231 (+) False G795438
XM_021615424.1 mRNA upstream 495294 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 536343 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 910192 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 920646 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 956222 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-4 mRNA downstream 435 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 7576 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 8987 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 11795 33046811 ~ 33046882 (+) True trnag-ucc-8
trnag-ucc-9 mRNA downstream 13064 33048080 ~ 33048151 (+) True trnag-ucc-9
TU904694 other upstream 447557 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 532196 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 532590 32501847 ~ 32502355 (+) True G794892
TU904135 other upstream 910094 32122682 ~ 32124851 (+) False zgc:112271
TU906563 other downstream 1086406 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1520915 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2329972 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3278113 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3999402 37034418 ~ 37035918 (+) True G799578