RNA id: TU905375


Basic Information

Item Value
RNA id TU905375
length 1799
lncRNA type read_through
GC content 0.42
exon number 4
gene id trnag-ucc-3
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33032239 ~ 33061120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaattcatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcctatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgatagtcggcattccgacaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaacccgggacctctcgcaccctaagcgagaatcatacccctagaccaacgagccttatgcaaaagttatttttttgctttctgcagcaatgacagtgaagatatcgattgacgtgtccatggtgcttggaacatttgaacatcatgtgagtgttttgtgctttacttgtgagcataacagtcttccaaaatcttgaccatgcttcagtgttttgtgctttacttgtgagcataacagtcttccaaaatcttgaccatgcttcagttcaaatcttctgtagttcatctgctgtgtctttcacattctgtcttgttcagtcgcgacagcaaaatgatgacgagtttttacaaattaataaagtgcaaatgagatcaattcatttttttaaaaacaaatgaaaaaataagacttccaaaagaatggaactcatttattttgagtcaaatgacgcaaaggtacgtgaatcaaagtcaattaattttgaaaatacccattcaaatagatccgttttcaactagagagattaagactcggcgtatccgtctcaatcctccacaactgcttatgttaaccctccatatctgcagtgaaagatggtggacctagatcggtttttgtcaaaccatgagacaatacctataatcggtcttctcacaaaaacatctctagcttccgaaccgtttgacctacaaattcatatgaccactctctggaatgaggagaccctcacgaacacggtggtattctcaatttttctctacatcccccacaagtgtcaggagactcgtctgaagtcacaagcgtctatgtgccaagttctgtttgtagaatccaaaatcttgggctacaaactaatgtgaccccacttgtcgcaatgttctccgttttgccctacgttcccaacaagtgtcacgggactaatctgaaggtaacctgtagtgattaaaacgatagattttttaaccagggacctctcgcaacctaagccataatcatacacctaaaccgtgaaagtgaattatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccagccaatgcagagcctgaggaattaatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaagttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcccatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgataatcggcgttccgaccagtggcccaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaaccagggacctctcgcaacctaagccataatcatacacctaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905376 lncRNA upstream 58 33029550 ~ 33032181 (+) False trnag-ucc-19
TU904964 lncRNA upstream 3058 33016479 ~ 33029181 (+) True G795141
TU904975 lncRNA upstream 6961 33012277 ~ 33025278 (+) False G795141
TU905381 lncRNA downstream 518 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905379 lncRNA downstream 1966 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905391 lncRNA downstream 45129 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 55087 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA downstream 55087 33116207 ~ 33123231 (+) False G795438
XM_021615424.1 mRNA upstream 492588 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 533637 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 907486 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 917940 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 953516 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-18 mRNA downstream 84 33061204 ~ 33061275 (+) True trnag-ucc-18
trnag-ucc-19 mRNA downstream 589 33061709 ~ 33061780 (+) False trnag-ucc-19
trnag-ucc-20 mRNA downstream 1094 33062214 ~ 33062285 (+) True trnag-ucc-20
trnag-ucc-21 mRNA downstream 3764 33064884 ~ 33064955 (+) True trnag-ucc-21
trnag-ucc-22 mRNA downstream 4269 33065389 ~ 33065460 (+) True trnag-ucc-22
TU904694 other upstream 444851 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 529490 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 529884 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 907503 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1060302 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1494811 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2303868 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3252009 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3973298 37034418 ~ 37035918 (+) True G799578

Expression Profile