RNA id: trnag-ucc-6


Basic Information

Item Value
RNA id trnag-ucc-6
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-6
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33042592 ~ 33042663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905376 lncRNA upstream 10411 33029550 ~ 33032181 (+) False trnag-ucc-19
TU904964 lncRNA upstream 13411 33016479 ~ 33029181 (+) True G795141
TU904990 lncRNA upstream 17314 33013719 ~ 33025278 (+) False G795141
TU905384 lncRNA downstream 3617 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905381 lncRNA downstream 18975 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905379 lncRNA downstream 20423 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905391 lncRNA downstream 63586 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 73544 33116207 ~ 33123231 (+) False G795438
trnag-ucc-4 mRNA upstream 7070 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-3 mRNA upstream 7576 33034945 ~ 33035016 (+) False trnag-ucc-3
XM_021615424.1 mRNA upstream 502941 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 543990 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 917839 32122759 ~ 32124753 (+) False zgc:112271
trnag-ucc-7 mRNA downstream 1340 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 4148 33046811 ~ 33046882 (+) True trnag-ucc-8
trnag-ucc-9 mRNA downstream 5417 33048080 ~ 33048151 (+) True trnag-ucc-9
trnag-ucc-10 mRNA downstream 6686 33049349 ~ 33049420 (+) False trnag-ucc-10
trnag-ucc-11 mRNA downstream 8097 33050760 ~ 33050831 (+) True trnag-ucc-11
TU904694 other upstream 455204 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 539843 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 540237 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 917856 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1078759 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1513268 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2322325 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3270466 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3991755 37034418 ~ 37035918 (+) True G799578