RNA id: trnag-ucc-22



Basic Information


Item Value
RNA id trnag-ucc-22
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnag-ucc-22
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33065389 ~ 33065460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggtttgattcccggccaatgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905381 lncRNA upstream 1561 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905375 lncRNA upstream 4269 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905384 lncRNA upstream 15954 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905376 lncRNA upstream 33208 33029550 ~ 33032181 (+) False trnag-ucc-19
TU904964 lncRNA upstream 36208 33016479 ~ 33029181 (+) True G795141
TU905391 lncRNA downstream 40789 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 50747 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA downstream 50747 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA downstream 50747 33116207 ~ 33123231 (+) True G795438
TU905398 lncRNA downstream 77921 33143381 ~ 33143673 (+) True G795442
trnag-ucc-21 mRNA upstream 434 33064884 ~ 33064955 (+) True trnag-ucc-21
trnag-ucc-20 mRNA upstream 3104 33062214 ~ 33062285 (+) True trnag-ucc-20
trnag-ucc-19 mRNA upstream 3609 33061709 ~ 33061780 (+) False trnag-ucc-19
trnag-ucc-18 mRNA upstream 4114 33061204 ~ 33061275 (+) True trnag-ucc-18
trnag-ucc-17 mRNA upstream 4619 33060699 ~ 33060770 (+) True trnag-ucc-17
trnag-ucc-23 mRNA downstream 434 33065894 ~ 33065965 (+) True trnag-ucc-23
trnag-ucc-24 mRNA downstream 939 33066399 ~ 33066470 (+) True trnag-ucc-24
trnag-ucc-25 mRNA downstream 1444 33066904 ~ 33066975 (+) True trnag-ucc-25
trnag-ucc-26 mRNA downstream 1949 33067409 ~ 33067480 (+) True trnag-ucc-26
trnag-ucc-27 mRNA downstream 3218 33068678 ~ 33068749 (+) True trnag-ucc-27
TU904694 other upstream 478001 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 562640 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 563034 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 940653 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1055962 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1490471 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2299528 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3247669 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3968958 37034418 ~ 37035918 (+) True G799578