RNA id: trnag-ucc-36


Basic Information

Item Value
RNA id trnag-ucc-36
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-36
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33081097 ~ 33081168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905379 lncRNA upstream 14823 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905381 lncRNA upstream 17269 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905375 lncRNA upstream 19977 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905384 lncRNA upstream 31662 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905376 lncRNA upstream 48916 33029550 ~ 33032181 (+) False trnag-ucc-19
TU905391 lncRNA downstream 25081 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 35039 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA downstream 35039 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA downstream 35039 33116207 ~ 33123231 (+) True G795438
TU905398 lncRNA downstream 62213 33143381 ~ 33143673 (+) True G795442
trnag-ucc-35 mRNA upstream 1199 33079827 ~ 33079898 (+) True trnag-ucc-35
trnag-ucc-34 mRNA upstream 2469 33078557 ~ 33078628 (+) True trnag-ucc-34
trnag-ucc-33 mRNA upstream 3881 33077145 ~ 33077216 (+) True trnag-ucc-33
trnag-ucc-32 mRNA upstream 5292 33075734 ~ 33075805 (+) True trnag-ucc-32
trnag-ucc-31 mRNA upstream 6704 33074322 ~ 33074393 (+) True trnag-ucc-31
trnag-ucc-37 mRNA downstream 1199 33082367 ~ 33082438 (+) True trnag-ucc-37
trnag-ucc-38 mRNA downstream 2469 33083637 ~ 33083708 (+) True trnag-ucc-38
trnag-ucc-39 mRNA downstream 3739 33084907 ~ 33084978 (+) True trnag-ucc-39
trnag-ucc-40 mRNA downstream 5009 33086177 ~ 33086248 (+) True trnag-ucc-40
trnag-ucc-41 mRNA downstream 6279 33087447 ~ 33087518 (+) True trnag-ucc-41
TU904694 other upstream 493709 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 578348 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 578742 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 956361 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1040254 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1474763 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2283820 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3231961 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3953250 37034418 ~ 37035918 (+) True G799578