RNA id: trnag-ucc-40


Basic Information

Item Value
RNA id trnag-ucc-40
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-40
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33086177 ~ 33086248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905379 lncRNA upstream 19903 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905381 lncRNA upstream 22349 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905375 lncRNA upstream 25057 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905384 lncRNA upstream 36742 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905376 lncRNA upstream 53996 33029550 ~ 33032181 (+) False trnag-ucc-19
TU905391 lncRNA downstream 20001 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 29959 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA downstream 29959 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA downstream 29959 33116207 ~ 33123231 (+) True G795438
TU905398 lncRNA downstream 57133 33143381 ~ 33143673 (+) True G795442
trnag-ucc-39 mRNA upstream 1199 33084907 ~ 33084978 (+) True trnag-ucc-39
trnag-ucc-38 mRNA upstream 2469 33083637 ~ 33083708 (+) True trnag-ucc-38
trnag-ucc-37 mRNA upstream 3739 33082367 ~ 33082438 (+) True trnag-ucc-37
trnag-ucc-36 mRNA upstream 5009 33081097 ~ 33081168 (+) True trnag-ucc-36
trnag-ucc-35 mRNA upstream 6279 33079827 ~ 33079898 (+) True trnag-ucc-35
trnag-ucc-41 mRNA downstream 1199 33087447 ~ 33087518 (+) True trnag-ucc-41
trnag-ucc-42 mRNA downstream 2469 33088717 ~ 33088788 (+) True trnag-ucc-42
trnag-ucc-43 mRNA downstream 3739 33089987 ~ 33090058 (+) True trnag-ucc-43
trnag-ucc-44 mRNA downstream 5009 33091257 ~ 33091328 (+) True trnag-ucc-44
trnag-ucc-45 mRNA downstream 6279 33092527 ~ 33092598 (+) True trnag-ucc-45
TU904694 other upstream 498789 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 583428 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 583822 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 961441 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1035174 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1469683 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2278740 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3226881 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3948170 37034418 ~ 37035918 (+) True G799578