RNA id: trnag-ucc-44


Basic Information

Item Value
RNA id trnag-ucc-44
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-44
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33091257 ~ 33091328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905379 lncRNA upstream 24983 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905381 lncRNA upstream 27429 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905375 lncRNA upstream 30137 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905384 lncRNA upstream 41822 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905376 lncRNA upstream 59076 33029550 ~ 33032181 (+) False trnag-ucc-19
TU905391 lncRNA downstream 14921 33106249 ~ 33106723 (+) True G795437
TU905392 lncRNA downstream 24879 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA downstream 24879 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA downstream 24879 33116207 ~ 33123231 (+) True G795438
TU905398 lncRNA downstream 52053 33143381 ~ 33143673 (+) True G795442
trnag-ucc-43 mRNA upstream 1199 33089987 ~ 33090058 (+) True trnag-ucc-43
trnag-ucc-42 mRNA upstream 2469 33088717 ~ 33088788 (+) True trnag-ucc-42
trnag-ucc-41 mRNA upstream 3739 33087447 ~ 33087518 (+) True trnag-ucc-41
trnag-ucc-40 mRNA upstream 5009 33086177 ~ 33086248 (+) True trnag-ucc-40
trnag-ucc-39 mRNA upstream 6279 33084907 ~ 33084978 (+) True trnag-ucc-39
trnag-ucc-45 mRNA downstream 1199 33092527 ~ 33092598 (+) True trnag-ucc-45
trnag-ucc-46 mRNA downstream 19049 33110377 ~ 33110448 (+) True trnag-ucc-46
trnag-ucc-47 mRNA downstream 23279 33114607 ~ 33114678 (+) True trnag-ucc-47
trnag-ucc-48 mRNA downstream 31965 33123293 ~ 33123364 (+) True trnag-ucc-48
trnag-ucc-49 mRNA downstream 33234 33124562 ~ 33124633 (+) True trnag-ucc-49
TU904694 other upstream 503869 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 588508 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 588902 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 966521 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1030094 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1464603 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2273660 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3221801 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3943090 37034418 ~ 37035918 (+) True G799578