RNA id: trnag-ucc-54


Basic Information

Item Value
RNA id trnag-ucc-54
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-54
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33131527 ~ 33131598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905392 lncRNA upstream 8296 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 8296 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 8296 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 24804 33106249 ~ 33106723 (+) True G795437
TU905379 lncRNA upstream 65253 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905398 lncRNA downstream 11783 33143381 ~ 33143673 (+) True G795442
TU905402 lncRNA downstream 56750 33188348 ~ 33215920 (+) False G795445
TU905403 lncRNA downstream 56750 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA downstream 99477 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 119423 33251021 ~ 33316895 (+) True G795477
trnag-ucc-53 mRNA upstream 1322 33130134 ~ 33130205 (+) True trnag-ucc-53
trnag-ucc-52 mRNA upstream 2715 33128741 ~ 33128812 (+) True trnag-ucc-52
trnag-ucc-51 mRNA upstream 4108 33127348 ~ 33127419 (+) True trnag-ucc-51
trnag-ucc-50 mRNA upstream 5501 33125955 ~ 33126026 (+) True trnag-ucc-50
trnag-ucc-49 mRNA upstream 6894 33124562 ~ 33124633 (+) True trnag-ucc-49
trnag-ucc-55 mRNA downstream 1322 33132920 ~ 33132991 (+) True trnag-ucc-55
trnag-ucc-56 mRNA downstream 2591 33134189 ~ 33134260 (+) True trnag-ucc-56
trnag-ucc-57 mRNA downstream 3860 33135458 ~ 33135529 (+) True trnag-ucc-57
trnag-ucc-58 mRNA downstream 5129 33136727 ~ 33136798 (+) True trnag-ucc-58
trnag-ucc-59 mRNA downstream 6147 33137745 ~ 33137816 (+) True trnag-ucc-59
TU904694 other upstream 544139 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 628778 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 629172 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1006791 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 989824 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1424333 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2233390 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3181531 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3902820 37034418 ~ 37035918 (+) True G799578