RNA id: trnag-ucc-60


Basic Information

Item Value
RNA id trnag-ucc-60
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnag-ucc-60
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33139156 ~ 33139227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgccccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905392 lncRNA upstream 15925 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 15925 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 15925 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 32433 33106249 ~ 33106723 (+) True G795437
TU905379 lncRNA upstream 72882 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905398 lncRNA downstream 4154 33143381 ~ 33143673 (+) True G795442
TU905402 lncRNA downstream 49121 33188348 ~ 33215920 (+) False G795445
TU905403 lncRNA downstream 49121 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA downstream 91848 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 111794 33251021 ~ 33316895 (+) True G795477
trnag-ucc-59 mRNA upstream 1340 33137745 ~ 33137816 (+) True trnag-ucc-59
trnag-ucc-58 mRNA upstream 2358 33136727 ~ 33136798 (+) True trnag-ucc-58
trnag-ucc-57 mRNA upstream 3627 33135458 ~ 33135529 (+) True trnag-ucc-57
trnag-ucc-56 mRNA upstream 4896 33134189 ~ 33134260 (+) True trnag-ucc-56
trnag-ucc-55 mRNA upstream 6165 33132920 ~ 33132991 (+) True trnag-ucc-55
trnag-ucc-61 mRNA downstream 1198 33140425 ~ 33140496 (+) True trnag-ucc-61
trnag-ucc-62 mRNA downstream 2465 33141692 ~ 33141763 (+) True trnag-ucc-62
trnag-ucc-63 mRNA downstream 3874 33143101 ~ 33143172 (+) True trnag-ucc-63
trnag-ucc-64 mRNA downstream 5285 33144512 ~ 33144583 (+) True trnag-ucc-64
trnag-ucc-65 mRNA downstream 7951 33147178 ~ 33147249 (+) True trnag-ucc-65
TU904694 other upstream 551768 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 636407 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 636801 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1014420 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 982195 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1416704 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2225761 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3173902 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3895191 37034418 ~ 37035918 (+) True G799578