RNA id: trnap-agg-39


Basic Information

Item Value
RNA id trnap-agg-39
length 72
RNA type mRNA
GC content 0.47
exon number 1
gene id trnap-agg-39
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33151470 ~ 33151541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905429 lncRNA downstream 28203 33116205 ~ 33123267 (-) False G795464
TU905430 lncRNA downstream 28203 33116205 ~ 33123267 (-) True G795464
TU905426 lncRNA downstream 53457 33096150 ~ 33098013 (-) True G795461
TU905407 lncRNA downstream 82751 33063170 ~ 33068719 (-) True G795448
TU905421 lncRNA downstream 84985 33046280 ~ 33066485 (-) True G795456
TU905443 lncRNA upstream 84419 33235960 ~ 33236337 (-) True G795474
TU905497 lncRNA upstream 96701 33248242 ~ 33251310 (-) True G795522
TU905520 lncRNA upstream 132350 33283891 ~ 33290054 (-) True LOC110531942
TU905577 lncRNA upstream 183760 33335301 ~ 33335636 (-) True G795591
TU905578 lncRNA upstream 184533 33336074 ~ 33336483 (-) True G795592
trnap-agg-38 mRNA downstream 7939 33143460 ~ 33143531 (-) True trnap-agg-38
trnap-agg-37 mRNA downstream 9348 33142051 ~ 33142122 (-) True trnap-agg-37
trnap-agg-36 mRNA downstream 13295 33138104 ~ 33138175 (-) True trnap-agg-36
trnap-agg-35 mRNA downstream 36433 33114966 ~ 33115037 (-) True trnap-agg-35
trnap-agg-34 mRNA downstream 37842 33113557 ~ 33113628 (-) True trnap-agg-34
trnap-agg-40 mRNA upstream 3876 33155417 ~ 33155488 (-) True trnap-agg-40
trnap-agg-41 mRNA upstream 19388 33170929 ~ 33171000 (-) True trnap-agg-41
trnap-agg-42 mRNA upstream 24603 33176144 ~ 33176215 (-) True trnap-agg-42
trnap-agg-43 mRNA upstream 28550 33180091 ~ 33180162 (-) True trnap-agg-43
trnap-agg-44 mRNA upstream 29959 33181500 ~ 33181571 (-) True trnap-agg-44
TU904054 other downstream 1123202 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 1489272 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1732497 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1747601 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2793506 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 899518 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 1718414 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2202678 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2234312 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2340485 35492026 ~ 35521332 (-) True LOC118966032