RNA id: trnag-ucc-78


Basic Information

Item Value
RNA id trnag-ucc-78
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-78
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33165354 ~ 33165425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905398 lncRNA upstream 21681 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 42123 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 42123 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 42123 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 58631 33106249 ~ 33106723 (+) True G795437
TU905402 lncRNA downstream 22923 33188348 ~ 33215920 (+) False G795445
TU905403 lncRNA downstream 22923 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA downstream 65650 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 85596 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 156778 33322203 ~ 33322608 (+) True G795560
trnag-ucc-77 mRNA upstream 1199 33164084 ~ 33164155 (+) True trnag-ucc-77
trnag-ucc-76 mRNA upstream 2468 33162815 ~ 33162886 (+) True trnag-ucc-76
trnag-ucc-75 mRNA upstream 3738 33161545 ~ 33161616 (+) True trnag-ucc-75
trnag-ucc-74 mRNA upstream 5007 33160276 ~ 33160347 (+) True trnag-ucc-74
trnag-ucc-73 mRNA upstream 6277 33159006 ~ 33159077 (+) True trnag-ucc-73
trnag-ucc-79 mRNA downstream 1198 33166623 ~ 33166694 (+) True trnag-ucc-79
trnag-ucc-80 mRNA downstream 3876 33169301 ~ 33169372 (+) True trnag-ucc-80
trnag-ucc-81 mRNA downstream 5145 33170570 ~ 33170641 (+) True trnag-ucc-81
trnag-ucc-82 mRNA downstream 6554 33171979 ~ 33172050 (+) True trnag-ucc-82
trnag-ucc-83 mRNA downstream 7821 33173246 ~ 33173317 (+) True trnag-ucc-83
TU904694 other upstream 577966 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 662605 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 662999 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1040618 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 955997 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1390506 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2199563 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3147704 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3868993 37034418 ~ 37035918 (+) True G799578