RNA id: trnag-ucc-88


Basic Information

Item Value
RNA id trnag-ucc-88
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-88
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33179732 ~ 33179803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905398 lncRNA upstream 36059 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 56501 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 56501 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 56501 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 73009 33106249 ~ 33106723 (+) True G795437
TU905402 lncRNA downstream 8545 33188348 ~ 33215920 (+) False G795445
TU905403 lncRNA downstream 8545 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA downstream 51272 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 71218 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 142400 33322203 ~ 33322608 (+) True G795560
trnag-ucc-87 mRNA upstream 1198 33178463 ~ 33178534 (+) True trnag-ucc-87
trnag-ucc-86 mRNA upstream 2467 33177194 ~ 33177265 (+) True trnag-ucc-86
trnag-ucc-85 mRNA upstream 3876 33175785 ~ 33175856 (+) True trnag-ucc-85
trnag-ucc-84 mRNA upstream 5145 33174516 ~ 33174587 (+) True trnag-ucc-84
trnag-ucc-83 mRNA upstream 6415 33173246 ~ 33173317 (+) True trnag-ucc-83
trnag-ucc-89 mRNA downstream 1338 33181141 ~ 33181212 (+) True trnag-ucc-89
trnag-ucc-90 mRNA downstream 4158 33183961 ~ 33184032 (+) True trnag-ucc-90
trnag-ucc-91 mRNA downstream 5427 33185230 ~ 33185301 (+) True trnag-ucc-91
trnag-ucc-92 mRNA downstream 6696 33186499 ~ 33186570 (+) True trnag-ucc-92
trnag-ucc-93 mRNA downstream 7965 33187768 ~ 33187839 (+) True trnag-ucc-93
TU904694 other upstream 592344 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 676983 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 677377 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1054996 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 941619 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1376128 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2185185 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3133326 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3854615 37034418 ~ 37035918 (+) True G799578