RNA id: trnap-agg-44


Basic Information

Item Value
RNA id trnap-agg-44
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-44
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33181500 ~ 33181571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905429 lncRNA downstream 58233 33116205 ~ 33123267 (-) False G795464
TU905430 lncRNA downstream 58233 33116205 ~ 33123267 (-) True G795464
TU905426 lncRNA downstream 83487 33096150 ~ 33098013 (-) True G795461
TU905407 lncRNA downstream 112781 33063170 ~ 33068719 (-) True G795448
TU905421 lncRNA downstream 115015 33046280 ~ 33066485 (-) True G795456
TU905443 lncRNA upstream 54389 33235960 ~ 33236337 (-) True G795474
TU905497 lncRNA upstream 66671 33248242 ~ 33251310 (-) True G795522
TU905520 lncRNA upstream 102320 33283891 ~ 33290054 (-) True LOC110531942
TU905577 lncRNA upstream 153730 33335301 ~ 33335636 (-) True G795591
TU905578 lncRNA upstream 154503 33336074 ~ 33336483 (-) True G795592
trnap-agg-43 mRNA downstream 1338 33180091 ~ 33180162 (-) True trnap-agg-43
trnap-agg-42 mRNA downstream 5285 33176144 ~ 33176215 (-) True trnap-agg-42
trnap-agg-41 mRNA downstream 10500 33170929 ~ 33171000 (-) True trnap-agg-41
trnap-agg-40 mRNA downstream 26012 33155417 ~ 33155488 (-) True trnap-agg-40
trnap-agg-39 mRNA downstream 29959 33151470 ~ 33151541 (-) True trnap-agg-39
trnap-agg-45 mRNA upstream 16203 33197774 ~ 33197845 (-) True trnap-agg-45
trnap-agg-46 mRNA upstream 17613 33199184 ~ 33199255 (-) True trnap-agg-46
trnap-agg-47 mRNA upstream 19023 33200594 ~ 33200665 (-) True trnap-agg-47
trnap-agg-48 mRNA upstream 21703 33203274 ~ 33203345 (-) True trnap-agg-48
trnap-agg-49 mRNA upstream 26921 33208492 ~ 33208563 (-) True trnap-agg-49
TU904054 other downstream 1153232 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 1519302 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1762527 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1777631 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2823536 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 869488 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 1688384 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2172648 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2204282 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2310455 35492026 ~ 35521332 (-) True LOC118966032