RNA id: trnag-ucc-102


Basic Information

Item Value
RNA id trnag-ucc-102
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-102
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33198825 ~ 33198896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905398 lncRNA upstream 55152 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 75594 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 75594 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 75594 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 92102 33106249 ~ 33106723 (+) True G795437
TU905405 lncRNA downstream 32179 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 52125 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 123307 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 124455 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 129219 33328115 ~ 33328354 (+) True G795568
trnag-ucc-101 mRNA upstream 1339 33197415 ~ 33197486 (+) True trnag-ucc-101
trnag-ucc-100 mRNA upstream 2606 33196148 ~ 33196219 (+) True trnag-ucc-100
trnag-ucc-99 mRNA upstream 3875 33194879 ~ 33194950 (+) True trnag-ucc-99
trnag-ucc-98 mRNA upstream 5144 33193610 ~ 33193681 (+) True trnag-ucc-98
trnag-ucc-97 mRNA upstream 6413 33192341 ~ 33192412 (+) True trnag-ucc-97
trnag-ucc-103 mRNA downstream 1339 33200235 ~ 33200306 (+) True trnag-ucc-103
trnag-ucc-104 mRNA downstream 2750 33201646 ~ 33201717 (+) True trnag-ucc-104
trnag-ucc-105 mRNA downstream 4019 33202915 ~ 33202986 (+) True trnag-ucc-105
trnag-ucc-106 mRNA downstream 5430 33204326 ~ 33204397 (+) True trnag-ucc-106
trnag-ucc-107 mRNA downstream 6699 33205595 ~ 33205666 (+) True trnag-ucc-107
TU904694 other upstream 611437 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 696076 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 696470 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1074089 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 922526 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1357035 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2166092 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3114233 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3835522 37034418 ~ 37035918 (+) True G799578