RNA id: trnag-ucc-109


Basic Information

Item Value
RNA id trnag-ucc-109
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-109
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33208133 ~ 33208204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905398 lncRNA upstream 64460 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 84902 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 84902 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 84902 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 101410 33106249 ~ 33106723 (+) True G795437
TU905405 lncRNA downstream 22871 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 42817 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 113999 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 115147 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 119911 33328115 ~ 33328354 (+) True G795568
trnag-ucc-108 mRNA upstream 1198 33206864 ~ 33206935 (+) True trnag-ucc-108
trnag-ucc-107 mRNA upstream 2467 33205595 ~ 33205666 (+) True trnag-ucc-107
trnag-ucc-106 mRNA upstream 3736 33204326 ~ 33204397 (+) True trnag-ucc-106
trnag-ucc-105 mRNA upstream 5147 33202915 ~ 33202986 (+) True trnag-ucc-105
trnag-ucc-104 mRNA upstream 6416 33201646 ~ 33201717 (+) True trnag-ucc-104
trnag-ucc-110 mRNA downstream 1340 33209544 ~ 33209615 (+) True trnag-ucc-110
trnag-ucc-111 mRNA downstream 2751 33210955 ~ 33211026 (+) True trnag-ucc-111
trnag-ucc-112 mRNA downstream 3485 33211689 ~ 33211760 (+) True trnag-ucc-112
trnag-ucc-113 mRNA downstream 4894 33213098 ~ 33213169 (+) True trnag-ucc-113
trnag-ucc-114 mRNA downstream 6219 33214423 ~ 33214494 (+) True trnag-ucc-114
TU904694 other upstream 620745 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 705384 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 705778 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1083397 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 913218 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1347727 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2156784 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3104925 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3826214 37034418 ~ 37035918 (+) True G799578