RNA id: trnag-ucc-122


Basic Information

Item Value
RNA id trnag-ucc-122
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-122
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33228286 ~ 33228357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905402 lncRNA upstream 12366 33188348 ~ 33215920 (+) False G795445
TU905398 lncRNA upstream 84613 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 105055 33116207 ~ 33123231 (+) False G795438
TU905405 lncRNA downstream 2718 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 22664 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 93846 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 94994 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 99758 33328115 ~ 33328354 (+) True G795568
trnag-ucc-121 mRNA upstream 1338 33226877 ~ 33226948 (+) True trnag-ucc-121
trnag-ucc-120 mRNA upstream 2747 33225468 ~ 33225539 (+) True trnag-ucc-120
trnag-ucc-119 mRNA upstream 6816 33221399 ~ 33221470 (+) True trnag-ucc-119
trnag-ucc-118 mRNA upstream 8492 33219723 ~ 33219794 (+) True trnag-ucc-118
trnag-ucc-117 mRNA upstream 9817 33218398 ~ 33218469 (+) True trnag-ucc-117
trnag-ucc-123 mRNA downstream 1254 33229611 ~ 33229682 (+) True trnag-ucc-123
trnag-ucc-124 mRNA downstream 2579 33230936 ~ 33231007 (+) True trnag-ucc-124
trnag-ucc-125 mRNA downstream 3988 33232345 ~ 33232416 (+) True trnag-ucc-125
trnag-ucc-126 mRNA downstream 4634 33232991 ~ 33233062 (+) True trnag-ucc-126
trnag-ucc-127 mRNA downstream 6043 33234400 ~ 33234471 (+) True trnag-ucc-127
TU904694 other upstream 640898 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 725537 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 725931 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1103550 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 893065 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1327574 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2136631 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3084772 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3806061 37034418 ~ 37035918 (+) True G799578