RNA id: trnag-ucc-138


Basic Information

Item Value
RNA id trnag-ucc-138
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnag-ucc-138
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33251296 ~ 33251367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattggtggtatagtggtgagcattgctgccttccaagcagttgacccgggtttgattcccggccaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905403 lncRNA upstream 17798 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA upstream 18517 33231075 ~ 33232779 (+) True G795447
TU905402 lncRNA upstream 35376 33188348 ~ 33215920 (+) False G795445
TU905398 lncRNA upstream 107623 33143381 ~ 33143673 (+) True G795442
TU905393 lncRNA upstream 128065 33116207 ~ 33123231 (+) False G795438
TU905541 lncRNA downstream 70836 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 71984 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 76748 33328115 ~ 33328354 (+) True G795568
TU905613 lncRNA downstream 139965 33391332 ~ 33391805 (+) True G795617
TU905701 lncRNA downstream 261122 33512489 ~ 33616511 (+) True G795701
trnag-ucc-137 mRNA upstream 1337 33249888 ~ 33249959 (+) True trnag-ucc-137
trnag-ucc-136 mRNA upstream 4153 33247072 ~ 33247143 (+) True trnag-ucc-136
trnag-ucc-135 mRNA upstream 5561 33245664 ~ 33245735 (+) True trnag-ucc-135
trnag-ucc-134 mRNA upstream 6969 33244256 ~ 33244327 (+) True trnag-ucc-134
trnag-ucc-133 mRNA upstream 8377 33242848 ~ 33242919 (+) True trnag-ucc-133
XM_021615469.2 mRNA downstream 109895 33361262 ~ 33387966 (+) False LOC110531943
XM_021615470.2 mRNA downstream 109895 33361262 ~ 33387966 (+) False LOC110531943
XM_021615468.2 mRNA downstream 109896 33361263 ~ 33387966 (+) False LOC110531943
XM_021615471.2 mRNA downstream 109896 33361263 ~ 33387966 (+) True LOC110531943
XM_021615472.2 mRNA downstream 297804 33549171 ~ 33686031 (+) True LOC110531945
TU904694 other upstream 663908 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 748547 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 748941 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1126560 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 870055 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1304564 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2113621 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3061762 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3783051 37034418 ~ 37035918 (+) True G799578