RNA id: XM_021615468.2


Basic Information

Item Value
RNA id XM_021615468.2
length 6514
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110531943
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33361262 ~ 33387966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTGGTGGAGAAGAAGGCATACGTCATTCACAATGGCGGAGacagggtgagaaggagagtgtgtTAGTGAAGCGGCGCAGTAACCAACTACATTGCCCGCGAAAGACGCTCACGGTGCCTGAAAAATGGCCCTGAACTCCAAAGTGGAGAGAAAAACGGACATACAGTGTCTGAAGACCGGCGAGCTCGACGTGGAGAGCGGGGATAGCAAGAAAAATTCGTGGTCAGCCGCCATCTCGGCCACATCCAACCAAAATGGCGATCAGACTGGATGTGAAGACCGTATAATGCCGGAACAAGAAGCATCTGAGCGGCGGAGGAGCGGGCACACGGACACAAGAAGCTTCAATAATTCACCGCTACCCGGCCAGAGACTGGCTGAACAGTTGCCAAGGAGAAATTTTCAGATACCGAGGAAGATTAAGGAACGGAAAGGTCTGTACCAGTTTCTGCCCCCTGACTCCCGGGAGTTTGagggccttgtgaagattctgTCCTCCTCCTACCTGGATGCATCCTCTAGAGGGACATTCTCCTACAGCAAGGCCAGGCTCATTCACAATGAGCTGCTGGAAAAAGAGttcaTTGAGAAGAGGAGGGAGCTAAAGCAGGAGGGCCGTACAGACCCAGAGCTGGTGGAGTCCTACTGCTTCATGTTCCCAGACAAGTCTAAGCTCCCGTTGATTTGTGAGAAGGGTCTGTCCGTGGGACACTCCAGGATCACTGCACTCGGAAATCCAGCAATGGGTGTTTATCTGTCCAAATTCTCTGATTTGCTTCAAATGAACCCGTTTGAAGCAGGAACCTGTGGAGACATTGTTGTATTTAAAGTCATGAGGGGCCGGCTGAAGAGCATCTTTGAGAACATGCCCAAGAGTGTACTGGACCCCACGCCCAAGTTTGACTGTCATGTCTCTAAGAACGCCACACGGGTCACTTCCCTGCTGTCATACAGGGCCTTTGAGCTCACGCAGCAGTATTTCTATGAGTTTGCTTTTGATGAGATCAAGTCTCGGCCCAGGCATGTGTGTCCATACGCTGTGGTGTCCTTCCAGTACAAAGGCAAGGAGTCTGCTGCTGCACCTATGGCTGCACACAGGTTCAACAGCACTGTCTGTGAAGGAGGAAGCAGAAGGAGGAGTAGCTACACTGTGTGGAGTGGGCCGCTGGTGAACAAGGGACAGGAGTTGTGCCAGGTGTGTCTGTGCTCCTCTACACGCCATTTCCTCCCTTTCAAACTAGCGGAGAAGTTGGAGATGAGTATGGGGATGCAGCTGGACCAGGTGAAGAGGAAGATTCCCTCTGTTCTGTTTTCCTGGGACACCTACAGCGGAACACGAGAAGtgctaAAGTGTGGGATGTACTGCAGCCTGTTTGAGGTGGTGGATGGGAAGGGAAAAGCGAGCACCAGCACTTTATCAGGACTAATACacaaactggagagagagaggatgGTGCTAGTGAAGCCTTTATTTGATAAAGGCTTTCTCTTCCTCTTGTCATCTACTCAGATGGTCAATCCCAAGGAACGACAGGGGCGGTTTGAAAAGAGCCTGCAGGCACTGTTTATCTTTCAGGAGTCCAGGGGAGTCATTAAGTACAAGCAGGAGCCTCTGTCATCTGAGCCTCAGCCCCCCCTCTTGGTCTCCATGGAACCATTCATCCCAGCCCTGCACTACGCCCTGCTGAAGATGCGCTCCACCCCCGACATCAAGCACCTCAGCACCGGGGTGGAGCGCCAGGCCCTAGACTACCTGACCAGGAGGGACAGTGTCAGGGCCTTCCTTGTCCCAGAGTACCAACAGAACCTGGATGAGAGGGGCAGCATGCACCCCGCGCCCCGTCCCAAATCCAACATGGAGGGTCTGCTACGCTCCTACCTGCATGGTCCCTCCTCGGCTTACGTCCTCCCCATGGTCAAGGCCAGGGACATGATGGACAGGATCAACCAGCCCCCGTCTGCCCCGGCACCCACCACCACGGACTACAGCCCTGTGTCAGACTGGGGGGGCTCAGGAGGGTCGGACAGACCAGAGAGGCAGCCTCCAGAGAGCAGTAGCAGTAGGAGGAGAGGGGGCCCTTCCCAGACCCAGGCCCATTCTAACGGGGCTGCAGCAGGGACAGGGGCCCCTCCCCAGAGGTCCAGGCTAGCCCAGAGTGATTATGATAAGGAAAAGATGAAACAGCTTCTGAAGCTGATCCAGCTGCATAAGAAGGCCCTTGTGAAGGAgccaggggagaaggagagggacgaGGGGGGTGATGATGGGTCCTGGGAGGGCCCCCACGGCCTGAAAAGAAAACTAGAGGAAGACGAATCAGGAGCCATGTATAAATATCTACGGGGAGCCCACTTCAGCAACGGAGAGCCCAGTAGAGTAGcccagggggaggaggagggggacggTGGGAACTACAACCTGGCAGCAGTAATGGAGAGTATGGGGATCTACAACACTGACCTGAGGGACAGGGGCAACTCCTCTCAGGCCTCCTCAGCCAACGAGACCCAGCGCCTGCTCAAGATCCTGCTCTCCACCCTCAACAAGGCTATGGCCCAGGGTGCTGCCGCCACCGACCTGCCCGACCACGGGGAGCCCACCACGGGCACGGCCAGCATGGAGAAGCCCCTGGCTGGAGCGCCGTACGCAGGGCGAGTGGAGCAGGCCCGACAGGACTGCCTGGAGGAGCAGACGGAGTGCAGTCTGGCCAGCCTCTTCAGCCCCGGCTCTCCAGGAGAACAACACCACACCTCAGAAAATCCACCACTCACCTTGGATCTGGCCTCTCACACAGACAAACCTTTCCCCTTCCTTGATGCTCTGACTGACGGCCACCTGGAGCAGAGGAGATGTctggaggggggtgagagaggtcaGAGTGGTGACTCCCTTGAGCGGGAGACTGTTACGAGGCAAGCCTCTATAGAAAGTGGGGCTTCCTTGGAGAGGGCTCTGAGGGGATCCTCTCTGGAAAGGGACAAGGTTCTTAGAGGAGCCTCACTGGAAAGTGAGAGGGTAGCCAGGGGCACCTCCCTAGAGAGGGACAGCAAGGTGGAGAGGCCAGCCAGGCCGTCCAGCACTCTGGACACCATCATTAGCCAGGGGCTCCACTGCCTCTCCAACTCCATCCAGGGCCTCATGGAGACCCAGAGGATCTACTACAACTCCCAGCTGTCCCCACGGCTGCCCCAGCTCCTCGCCTGGCAGCCCAACAGCTCTTTCTCAGACTTTGTGGCACCCTATGTCGTGTCTGTCCCTGTCCAGGGCCACGTCAACACCCTGTGTGAGAGGATGGGCCGACTGGTGCCCCAACCCCGCCACACTGACTCTGTTAAAGCGCATGGGGCTCGTTCTACCCTCTGTGCTCCCCCCACAACTGTGCCACCCCCTCCACATGCTCTCACCCCCGCCCCTCCCatgccctctctccccccacctcctcatCACATCCACCTCACCCCTAACCCTCCTATTATCACTCTCCCTTCCCCACCCCATTCCCTCacttccatctctccccttccccccatCCCTCACCTTCTACCCCCAACTGCCCTCGTCCACctccctgaccctgtacccaTCACGTCCCCCACCCCCAAGCATGTCCCCAaaaccaaagcacagccccctcaGGATAAGAGCGCCTCTTCCTCCCAGAGCCGGCACAAACTTGGTACGGTCAAACAGCCACACAAGAACCCCTCCGCAGCACAGAAGCCCTCCACGAAGAGGAAGTTTGAGCCATCTTCCTCAGAGTGTGAGATCTACTCCCCTTCCCAGGCCACCATGGGCTCCCCAGAATGCACCCCCACCCGGCCTAAAcaagcccctctcacagcccccTCTCCCCTGACCCCGGCCTCAGCCGCTGGACTACTGATAGGCCAGCTGAAGCCTGAGGTGTTCAGCAGCCTGGTGGAGATCTTCAAGGACGTGCAGAAGAACACGGTCAAGTTTTACATCCACTCTGGAGATGACGAGAGTGACATCTGTGTGGAGATCAAGGAGTATTTGATGAGCCTGGGTAACACAGAGTGTAACCCCCAGACATTCCTGGAGAAAAACAGCAATCTGGATAAACTGCTCATCATCATTCAGAACGAGGACATCTCTTCCCACGTTAACAAGATCCCAGCCCTGGTGTCGTTGAAGAAGCTGTCCATGGTGAGCTTTGCTGGAGTGGACAGTCTAGACGATGTGAAGAACCACACCTACAACGAGCTCTTTGTCTCTGGAGGATTCATCGTATCTGACGAATTTGTCCTCAACCCAGACTTCATAACTCACGACCGGTTGCAGGCATTCCTGGGGTTCCTAGAGGAACAGAGCTCTCCAGAGAACCCCTGGCAGTGGAAGATCCACTGTAAGTCCCAGAAGAAACTCAAAGAGCTGGGCAGGTTGAACAGTGATGCCATGGCTCTTCTGAACCTGCTAACAGCCTATCAGAAGAAGCACCTGGTGGAGTTCCTGCCTTACCACGAGTGTGACGCCCAATCACGTCAGGCCCCTGATCTAGACTGCCTGGTCAAGCTCCAGGCTAACCACACCCAGCACCGCCACATCATCTTCCTCACAGAGAGGCGGTTTGAGATGTTCCTGCAGTACTCCAGGAACGGCATAGTGATAGCGAACATCGATGACATCATGACAAGTTTTCACAGCCTAATTGGCTGCAGGGATCTGAACGAGCTGCCCACGCCGCCCTCTACTGTAGTGCATGACGAGTGTGTAGAAGAGGAAGATATGTCGCTGGACTCTGATGACGACACCCAAAACCAGCTTATCGCCAAGCCCCCTGCCCAAAGCCAGGAGGGGGGAACAGGAGGGGGCATGGGGGACGCAACCCAGCAGCCCCCCTTACCCGAGTCAGACGATTTTCGCCCCCCTCTTCCCGACCAGCTCAACACCCCCGGCCGACacacaccctcctccctctcttactCCAGCGGCACCGCCAACCTGGCCGACTTCGCTGCTCTCAAATCAGCCATCTCCCAGTTCAAAGCCTCTAACCAGGTTGGGAGGGCAGGCTTGGCGGACGTAGGCAGCACTTCGCCAGGAGCGTTTGCTGTCAACCCCCACCAGAGCTTCCTGTGTCCCTCCACCCAGTGGGCATCCTACTCTGGCTCCTCCGGCTACACGGCCTCCCCGGCCTACCCCGCCTCACCCTGCAACAGCAACCAAgaacaggactacagacacccaGCCACAGCACTTACTACAGCCCCAGGCTCCACTCTCACCACAGGGCCTCTGACCAGCCAGGCCCCCCTCACCCTATCAGACATCCCCCAGCCTCCCCTTCCACCACATCTCACGTTGGGTGGGGCTCTGTCTCAGTCATTTAGGATGCCTGGCTCTGATACTGGAGCAGCAGGGGTTAGTGTTGGAGCATCCTTCTCTATAGCCAGCAGTACTAGCATTCTGTCAAGCACAGCCATAGAGGTCTCTTCCTTTTCTCCATCCACTGCACTTACATACTCAGACCCTGCTGTTGCCTCCTTAGGCCTGGGCTATTCTCAGAGCGAAATGGCCCAGCTCGGCTACCTGGAAGGGGTCAGCTCCAGCACTAATGGGACCCCCACCCAGCAGGGGGACAGGACACTCAGTGGGCCCGGGGAGAGCCCATGGGGGTTAGGAGGTGGAACACCTAACAGTCAGGGAGGGGCCACGCCTGGCTCTGTTTCCCACAGCGGCCTCACCCAAagcggggagagggagaggacaggcacTCCTGGTGGCAGTACCCCTGGAAGTCAGGGGGGCCGGACTCCAGTGAACAGTATAGAAAGCCTTGGAGCGGGCATGGCTATTGCCTCTGTAGCCACCAGGGGGGGCTCAATAGCTAGGCCAATGCTGCCAATCCTTGGAGGTACTGGAGGTAGTCGAGGTGGCGTGGCCAGTGTACATCCACTCAGCGATGTTCGCTTCAGCTGTATAGGTGCCATGTCTGGACAGATGGATGGGGGTATGGAACGCGGGAGCATGGTTTCTAGGGGAATGGGTCCCGGGTCGTTAGGGGAGTGCCGAGGTAGAGGAGCCCCACCTGGAGGCCCCTGGCCTAGGCCAGGTGAACAAGATTACTACTCAGATTACACATACTCACACAACTACTCCCCCTGAACAGACAATCATAATTATAGAGAGGGGGTAATGGGCACGTCACACTGGTAGACCTGAATGTACATATTTACTTGTCATAAACACATTGAATTGATACTGGACAGAAggatcctgtttttttttttacaaataaactTGATACAGGCAGTGCCGAGTGTCGTTACTGTCGTGCATAAACGTACGCTCTTTACATGTGAGCCTTTTCAGACCCCTGTTCCAACCACTGTATTTATAATTGCCAAGAAATGTAATGAAGAGAAAGgcaacttttttggggggggaatcATAAGTGGAAGGCACTCACTTTTCACTGTTGGTTTTCTTTTTTACATCCTTGGTTGTTCAAAGAAGAATATCTATTAAAATAAACATGTTTCAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905551 lncRNA upstream 32909 33328115 ~ 33328354 (+) True G795568
TU905547 lncRNA upstream 37417 33323351 ~ 33323846 (+) True G795564
TU905541 lncRNA upstream 38655 33322203 ~ 33322608 (+) True G795560
TU905447 lncRNA upstream 44368 33251021 ~ 33316895 (+) True G795477
TU905405 lncRNA upstream 128484 33231075 ~ 33232779 (+) True G795447
TU905613 lncRNA downstream 3366 33391332 ~ 33391805 (+) True G795617
TU905701 lncRNA downstream 124523 33512489 ~ 33616511 (+) True G795701
TU905756 lncRNA downstream 192519 33580485 ~ 33638421 (+) True G795754
TU905790 lncRNA downstream 247559 33635525 ~ 33683587 (+) True G795786
TU905814 lncRNA downstream 300433 33688399 ~ 33689030 (+) False G795810
trnag-ucc-138 mRNA upstream 109896 33251296 ~ 33251367 (+) True trnag-ucc-138
trnag-ucc-137 mRNA upstream 111304 33249888 ~ 33249959 (+) True trnag-ucc-137
trnag-ucc-136 mRNA upstream 114120 33247072 ~ 33247143 (+) True trnag-ucc-136
trnag-ucc-135 mRNA upstream 115528 33245664 ~ 33245735 (+) True trnag-ucc-135
trnag-ucc-134 mRNA upstream 116936 33244256 ~ 33244327 (+) True trnag-ucc-134
XM_021615472.2 mRNA downstream 161205 33549171 ~ 33686031 (+) True LOC110531945
XM_036987834.1 mRNA downstream 475218 33863184 ~ 33925784 (+) False LOC110531947
XM_021615483.2 mRNA downstream 475219 33863185 ~ 33925783 (+) False LOC110531947
XM_021615485.2 mRNA downstream 475219 33863185 ~ 33925783 (+) False LOC110531947
XM_036987832.1 mRNA downstream 475220 33863186 ~ 33925780 (+) False LOC110531947
TU904694 other upstream 773875 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 858514 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 858908 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1236527 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 733456 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1167965 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1977022 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2925163 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3646452 37034418 ~ 37035918 (+) True G799578

Expression Profile