RNA id: XM_021615472.2


Basic Information

Item Value
RNA id XM_021615472.2
length 5002
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110531945
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33549171 ~ 33686031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCATTTCAGATATTTGTTTCCACAAATGTATAATTAGGTGGGTGAGTGCGAGAGAGGGATTTGGGATTTCAACGGACCCCAGATGACTGCGTGAGGCAAAATGCTCAGTGCGCGCCGACGTCGATAATGTGAAGGCAGGAATGGATTAAACTTGTGGTCTACAATGTTTTGCCTTGACTGAATGTAGCCTAAAGACGACGCACTGACAGAGGATTTAAACACTTGCCCAAACCTCCTAAAGAGGACTTTCTACAGGTAGAATATTTGGAACCCATCTTGAAGTAGGTTAATTCACCTCGGGGTTTTTCAAGCAGATTGAATGACGCCTCTCAATGATAGCGGGTGAAAACTAATCGCGCGTGGTGAGTTATTCTGTGAGTCATTAATTTGTTTTAGGAATATACGATTTTTTTGCGGAGTAGAATACGATAAAGAAAGAAGGATAGCGTGTTTGCGTTTTTGTTCACTTCTATATGTCGATCCAACGATCGTAGTTTTATTCGTGGAGATTTTTAGTGATGTTATAGACAGACTCCTGGTCGACCGAGACGCAGCAGGCAGATCATAGCGGACACGCCAGATCCGTCACTGCGCTCATGTGAAGTTGGCCTCGGCAAAAAGAATGTCACCCAGTTCTGCTGGACCTAAGATCAAAtagcattttttttaaaaggcTGTTCGATCTTGTCGATCTATTAGTTCTGTGAAATACATTTTACCGTATGCCTTTTCCTCAGATTGTTATGATCAGACCCCTTTTACTTTTAATGTGATAGGTGTTGCTTTGGTTAGCCTACAGTAATAAATAGTTTTGTGACAGTGGAACCCTTGCGTAAAGTCTATATTATTGATGTTTTCTCAGACAAATTATGTCAATTGCCTCGTTAACCTGAGCAATTTTGAATCCTCGTCAAATGGTGTTTTTCGATTCAACAAGCTACGCCAAGCACTCCTGGCAGTCAAGTGATGGGCGCAGTTTGCCTTAGTTGGAACCGAAGGCGTCTCGATTTTTTTTCATCCAGCTTGTTGAATCTCCTCCTTGGTGATAGGAATTGGCTCGTATTAACTCACTTTACTGCCATTTAGGTAGTAATATAGGCGGATTGCAGCCTCCCCTTTCGCTAGAACTAACTCAACCGTCGGAGCATCATGGCTCGTTACGCTCTCGGAACAAAGCAACACCCTCGCTTTCTATGGAGAGTGTTTTGGTTGACGAGAACGTTGGTGGATTTTGCGCTGTCGCAAGAGGTTTACGCACCCCATTCTATCCGGATTGAGGGACATTTGACCCTCGGTGGCCTCTTCCCTGTGCACACCAGAGGGACCGAAAGCACGCCTTGTGGAGATATCAAAAAGGAGAACGGGATCCATCGGCTGGAGGCCATGCTGTATGCTCTGGATCAAATTAACCTCGACGATCAACTTTTACCCAACATCACCCTAGGCGCCCGGGTGCTAGACACTTGTTCGAGGGATACATATGCGCTTGAACAATCATTAACTTTCGTTCAGGCATTGATACAGAAGGACACTTCAGATGTGAGGTGCACCAATGGAGAACCGCCCGTGTTCGTCAAGCCCGAGAAAGTGGTTGGAGTCGTTGGAGCCTCGGCAAGTTCCGTATCGATTATGGTCGCCAACATTTTGCGCCTCTTTCAGATCCCTCAGATCAGCTACGCCTCCACGGCCCCGGAGCTGAGTGATGACAGGCGCTATGACTTCTTCTCTCGGGTGGTTCCTCCAGACTCATTCCAAGTCCAAGCCATGGTGGACATCATCAGAGCCCTGGGCTGGACCTATGTGTCCACCGTGGCCTCTGAGGGCAGCTACGGAGAGAAGGGTGTGGAAACCTTCCAACAGATCTCCAAGGAGGCTGGTGGGATCTGCATCGCACAGTCTTTAAAAATTCCCCAAAACCCCAAGCTAGAGGATTATGACAAAGCCATCCAACATCTGCTGGATATGCACCACTCCCGGGCAGTCATCATCTTTGCCAGTGAAGAAGACATACGGGGAGTTCTCAATGCCACCAGGAGAGCCAATCAGGTGGGCCATTTCCTGTGGATTGGATCGGACAGTTGGGGGTCGAAGAGCAGCCCAATACACCAGTTAGAGGACGTGGCTGTGGGAGCAGTCACTATACTGCCCAAACGCTCATCTAttaaagGGTTTGATGAATACTTCACCTCGCTCACCCTGGAGAATAATCGCAGAAATGTGTGGTTCGCCGAATTCTGGGAGGAAAATTTTGACTGCAGGCTCCTCAGCTCCTCCAAACGAGAGGACACCAGCAGGAAATGCACAGgccAGGAGAGGATCGGGATAGACTCCAAGTATGAGCAGGAGGGGAAGGTTCAGTTTGTAATAGATGCTGTGTATGCCATGGCTTATGCCCTCCACAATATACAGAGAGACCTGTGTCCAGAGCACTCTGGCATTTGCCCTGGGATGGAGGCAGCCGAGGGGAAGACCCTGCTCAAGTATATACGCAACGTCAGCTTCAACGGTAGTGCAGGCACGTCGGTTATGTTTAATAAAAACGGTGACGCCCCGGGACGCTACGACCTGTTCCAGTTCCAGATGACCAACTCCAGTGTTCCTGAATACAGGCCCATCGGACAGTGGGTGGAGACACTCCAACTCAGGctcgAGGAGATGCAGTGGCCAGTAGGGGAGCCGGGTGTCCCTATCTCTGTGTGCAGTCTGCCCTGTAAGACAGgtgagaggaagaagagggtaAAGGGCATGCCATGCTGCTGGCACTGTGAGCTGTGTGATGGCTACCAGTACCAATACGATGAGACCTTGTGCCGCTTGTGCTCCTACGACATGAGGCCTGACCCAAACCGGACAACCTGCCAACCTATCCCCATCGTCAAGCTGGAGTGGCACTCCCCCTGGGCAGTCATTCCCGTCTTCCTTGCCATGCTGGGCATCATCGCCACCATCTTCGTCATGGCAACGTTCGTACGCTACAATGACACACCTATTGTGCGGGCATCGGGCCGCGAGCTGAGCTATGTGCTGCTGACGGGCATATTCCTGTGCTACATCATCACCTTCCTGATGATCGCCAAGCCCGATGTGGGCGTGTGCTCCTTCCGGAGAATCTTCTTGGGCCTGGGGATGAGCATCAGCTACGCCGCACTGCTCACCAAGACCAACCGCATCTACCGGATCTTTGAGCAGGGCAAGCAGACGGTGACCGCCCCACGTTTCATCAGCCCCACCTCCCAGATCGCTAtcacctcctccctcatctgcCTGCAGCTGCTGGGCGTGCTCATCTGGTTCGCCGTGGACCCGCCCAACACAGTCATCGACTACGACGAGCAAAAGACCATGAACCCCAACCTGGCGCGAGGCGTGCTGAAGTGTGACATCACGGACCTGCAGATGATCTGTTCGCTGGGCTACAGCATCCTTCTGATGGTCACATGTACCATCTATGCCATCAAAACCCGGGACGTGCCAGAGGACTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACATGTATTGTGTGGCTGGCCTTCATCCCCATCTTCTTTGGCACGGCCCAATCTGCAGAGAAGCTGTACATCCAGACGACTACCCTCACCATCTCTATGAACCTCAGTGCCTCTGTAGCTCTCGGGATGCTCTACATGCCCAAGGTATATGTCATCATCTTCCACCCAGAGCTTAACGtgcagaagaggaagaggagcttCAAGGCTGTGGTCACTGCCGCCACCATGTCCTCCCGTCTCTCTGTGAAGCCCAGCGAGAGGCCCAATGGAGAGGCCAAATCTGAGCTGTGTGAAAACCCACCCACCGACCCCATGAGTCAAGCTACGAAGAAAACATATGTGAGTTACAACAACCTCAGGATCTGATGGGTTCCCGGGGAATTCTCCATGTCCTTACTCTGTGATGATGACCAAGACTAGGGATCACAGGAAGAGAATACCGGGACAGGGACACTACCTACCTATGCACTCCAGGACTGTGGTTGGTGTCAACCTTCATCATTTGTGTCTTctgaagaggaggatggcaggggGAAAGGGAAAACGGAGGGATGGAGATATTTGACATCAGGAGTGAATGAATGATGAAGATACAAACACAGCTGTAAGATGGTAACTTGGCCCTGGTCCGTTCTGTTCTAGAACCAGACCCTGGAACCTCTCTGTAGGGTTTTCCGTTAACAGTGAGTGAACAACCTCTGTGATACAGGTGTCGCTGAAAAAAATATGTCTGAACAGTTTATTTCAACAGTTTTCAAATAATTTTTTTGCAATATCCATTAAAGTCATATTCTCTTGCAGTGCTCATGGTTTGTTTTTAAGTTAAGTGAGGTTTCTTCTTAGTTCCTTGTGCCTGATCTTTCATTTTTTCTGACATAACATTATGTTGAATTTTGATTGAATAACTTTAATTAGCAAGCTCCGTcacatgcattttgttttatgaAATCAACTCAAATCAGCTATTTTAACACAAATAACTATGTCAGAGTGACGGGCAATGtatctatatttttttgtaaatatctGAGAGTATTTTCGTGTTTGgatgacaacaaaaaaatatatccaGTCTATGTTTGATTGGCTTTGGATGGTAAGGAAAAAGCAGCACAAAGTGTTCACATTGcatgtgccaatgtttgtcttttctatttggtgtaaaaaaaaaaaagatacattCATTCTCAAAATGACTATGATGTTAACCATCATTCTGccgtttattcatttattttaaataaattacCTGATTCACAAGAGAATATGGCTTTAATCTGTTATTAAAATGGACCCCTCTGCATCTGCAAGCATGTTTGATTTATATAGTTTTGTACAGAGTACATTGTGTTTAATTATCAATGGTGTGGGGCAAAAAAACATTAATATTGAAACATTCATGCAAGTATGCTGTGATGTTGTCTGTCCAATTATCAACATGTAATAAAATAATTTTGTTATCTTTTATACACTCAAACAA

Function

GO: NA

KEGG:

id description
K04609 GRM7; metabotropic glutamate receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905613 lncRNA upstream 157366 33391332 ~ 33391805 (+) True G795617
TU905551 lncRNA upstream 220817 33328115 ~ 33328354 (+) True G795568
TU905547 lncRNA upstream 225325 33323351 ~ 33323846 (+) True G795564
TU905541 lncRNA upstream 226563 33322203 ~ 33322608 (+) True G795560
TU905447 lncRNA upstream 232276 33251021 ~ 33316895 (+) True G795477
TU905814 lncRNA downstream 2368 33688399 ~ 33689030 (+) False G795810
TU905816 lncRNA downstream 2458 33688489 ~ 33689030 (+) True G795810
TU905820 lncRNA downstream 5725 33691756 ~ 33691961 (+) True G795813
TU905825 lncRNA downstream 9975 33696006 ~ 33696221 (+) True G795818
TU905827 lncRNA downstream 11772 33697803 ~ 33698157 (+) True G795820
XM_021615469.2 mRNA upstream 161205 33361262 ~ 33387966 (+) False LOC110531943
XM_021615470.2 mRNA upstream 161205 33361262 ~ 33387966 (+) False LOC110531943
XM_021615468.2 mRNA upstream 161205 33361263 ~ 33387966 (+) False LOC110531943
XM_021615471.2 mRNA upstream 161205 33361263 ~ 33387966 (+) True LOC110531943
trnag-ucc-138 mRNA upstream 297804 33251296 ~ 33251367 (+) True trnag-ucc-138
XM_036987834.1 mRNA downstream 177153 33863184 ~ 33925784 (+) False LOC110531947
XM_021615483.2 mRNA downstream 177154 33863185 ~ 33925783 (+) False LOC110531947
XM_021615485.2 mRNA downstream 177154 33863185 ~ 33925783 (+) False LOC110531947
XM_036987832.1 mRNA downstream 177155 33863186 ~ 33925780 (+) False LOC110531947
XM_036987833.1 mRNA downstream 177155 33863186 ~ 33925780 (+) True LOC110531947
TU904694 other upstream 961783 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1046422 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1046816 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1424435 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 435391 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 869900 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1678957 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2627098 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3348387 37034418 ~ 37035918 (+) True G799578

Expression Profile