RNA id: XM_036987831.1


Basic Information

Item Value
RNA id XM_036987831.1
length 5584
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110531946
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33779448 ~ 33801499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCACAACCTGAAGATCCGAAAATGACGGGAGAGCAGAGCAGCAGTGGGGGAGGAGACTTGCACAGTGTGGCTGACTAACATGGCTGACTAACTACCTGCCACGGACTCTTCATGGATAATAGAGGAAAACAACAAAGGAAACACAAAATAAAACCTAATTAATTATCAACAAAGACATTAAACATCCAGAAATAACAACCCGCCATCGTTCCATCACTTTGACTTCCAGTGCATGTGGCCCTGAAACATTCTGAAGAGAGGAGGTGGGGAACACATAGGCCTACCACTATGCACTGTAAACAGAGAGGCTGGGACTATGGAGGTGTAGGGAGAACCAGGCCTCCAGGCAGAACTATTCCCCTGGTGCTGGGTGTCCTGGTGGCTCTGGTCCAGGGCACTGTACCTGGGGGACCGGTAGTGGAGGGCCTGGGGGAGATGGTGTTGGTGGACCTGGAAGCCTCCATgcactcctctgtcctctccgaCTTGAATGCTGCAGCCTCTGTCACAGAGGGACCTTCCATGGGTATCCCAGAATCCCTGGCTGCGGTCACAGAGGTGGCCCCCGTAGGCATCCCAGACTCTTCAGCGGTGGTGGGCCAGGGGTTCCAGTTGAGGATTCCACCCAGGTTGACGAATGGCAGTTGTAATGTTCAGTTAACTGAGGTGGGAAAGGACAGCTTACCCTCCTGGCTGCACTGGGACACTGGGAGCTGCATCCTACAAGGCCTAGCCCTGGAGCAGGACAAAGGTGTCCACCATATCTCCCGCTCTGAGATTAACAGTGGCCATGGTCTGGAGGCCTTCTCTATTGAGGTGCATCTAGAAGAGCGAGCCGACACTGAGCCGGCCCTTTTTGCCCTCCAGGCTGAGAGCAACAACCTCCAGTCCTTCATCTGCGGCAACGAGGAGCCCGTCACTGTCCTCACCATCATCTTGGATGCTGACCTCACCAAGATGGACGCCCAGCAGAGGGTAGGCCTGCTGGCCAGCATGAAGAAGTTTTCCGGTGTCACTCTGGAGCACATGAAGGTGGTACCCGTCGTCAACAACCGCCTGTTCGACATGTCCGCCTTCATGGCCGGGCCTGGAAATGCCAAGAAGGTGGTGGAGAATGGGGCCCTGTTGTCGTGGAAGCTTGGCTGTGCCCTTGACCAGTCCAACATTCCGAATATCAACAGCGTCCAATTACCTGCCAAAGACGGGTCCATGTCGTTCAAGTTAGGCTACCCAGTGGTGGGCTGGCACATCGTCAACAAGAAGCCCCACTTGGTAAAACGGGTCAGGAGGCAGCTGGGAAACACCCCCACTCCTGtgccctcccttctccccccaaCGACTCATCCCGAGCCCCCTACTCGTATCATTCCTACCCCCACATCCCCTTCCATCTCCCTAGCCACTGACAGCTCTGTCCCCCCTGTCCGTGGCCCCTTGCCCTTGCCGGTGAAGCCCACTATCAGGCTAAGAGATCAGATAGCCCACACTCCTACTATAGGGGTTCCTCATCCCACTAGGATCCTGGGCACCACCAGTACCATCCTTATACAGCCTACTATGACCCAGCCTGCTATTCCAGAGGCTACTGCTCTGCCCACCCCACCAAGCACCACTCGAAGGCCCAAGACTTCCACCAGCAAGAAAACCAAGAAGCCCAAGATCTCCACTCCAGCGCCTAAGGAACCTAAAACCACGACTAAGCCACCCAGACACACCACCCATTTGTCTCCGGTTCCTGACTACAACAACGAGAAGCCCCAGCTACGCAATCCCATCGACGAGGTGAACGCCTGGGTCGGGACCTACTTTGAGGTAAAGATTCCTCCAGATACTTTCTTCGACAAAGAGGACGGCACCACAGACAAGCTGCGTCTGACTCTGCGGAAGAACCAAAACGAGGCGGTGAGCGACACCTCCTGGATCCAGTTCAACAGCACCATCCAGCTCCTTTACGGTCTcccagagagagaacacatgggCAAACATGAGTACTTCATGCTGGCCACCGACAAGGCAGGCATGAGCACTATAGACGCCTTTGAGGTCCATGTCAACCGTTTGTCAGTCAACGACAAACCCTCGGTCGTTTTTGCTGCCCGTTTCTACGGCGAACCCAATACACTGACCAACGACGTCCACAAGAAGATCCTCCTGACAAAGAAGTTGGCATATGCACTGGGCGACCGGAACACCAGCACATTGACCCTGCGGAGCATCACCAAGGGCTCCATTGTGGTGGAGTGGACCAACAACAGCCTCCAGCAGAGCCCCTGTCCCAAGGACCAGATCACCGTCCTCAGCAGAAAGATCTCCGACCCCCAGGGCAggccaactctggccttttccaaTGCCATGGAGCCAGACTTCAAACCCATCAATATCTCCGTTCGTGGCACCAACAAGTGCCATACCTACACGTTTGTGCCCCCAGGAGAGGTGATTATCCCTGTTCCCCCTCCAGCCACTCCTTCCCCTGGCACGGGTCGTAGCACCAGTGACGATGTCTACCTGCACACGGTTATCCCGGCTGTGGTGGTGGCGGCACTACTGCTGATCGCCGGCGTCATCGCAATGGTCTGCTACCGCAAGAAGCGCAAGGGCAAGATGACCATTGAGGAGCAGGCCACCTTTATCAAGAAAGGCGTACCCATTATCTTTGCAGATGAGCTAGACGACTCCAAATCCCTCCCGCCCTCCAGTATTCCCCTAATCCTGCAGGAGGAGAAGCCGCCCCTGCCCCCTCCAGAGTACCCCAACATGGCTGGCCCTCACAGTACCCTCCTTAACCAGGATCTCCTGGAGTACTCCATCTACCAGGATGAGGACCCCAATGCACCCCCCTATCAGCCCCCTCCACCCTTCACTGTCCCCATTGAGGGGAAAGTGTCCCGCCCCAAGAACATGACATCATACAGGTCACCACCTCCCTACGTTCCTCCCTAACGCTCTCAAAAGCCTTGGCTTTGGGATGGATGAGAGCAGTTGTTTGTATGAAAACAATTTACGTAGGGATTTTACACACGTACTGTAGATTAAGATGGCTTCGACATGGATGGAGTAGGCGACCACACCTGTATGAGCGACCACTATGAAAACGTACTGTATAAGTCTACTACTGGCACAGGAAAACTGTACAGAGACCGTTTGAAACTCCAGCACTCTTTCTTTTGTTGTCCATCATAGTTGTGCTTTCGAATCTTgcttaataatatttttttaaatcggttCTTGCCAAGAATAATCATTTTTATCTTTGAAGATGTACTGTTTCTATTGTATAGAAAATAATGAAAATGCGGAAGAGCAGGCTGCAGAGGCCTTGGATCAAAtgtcaccatgacaacagactaGGAGGCTGTCATTCACAAAGTGAATCTTTATACAAATTACATTGTATTGCTTTTATCTTTCTTTGGGCTAGATCTACTAAGATTTTGCCACTGTTATTTTAAGAAGGGAGTAAGACAAAAAGGCAGACTAAAACTATGTTTTATTTACATCATAATCTACATTTATATTATTCTCTTAATCTCTAGCCACGTTTCCATCCGCAGTTTTTCTCAGAGTATAGTCAATCTGTATAAATAAAGATACAAATCATGGCAGCTGTGATCAAAACAGGTAGTTTCGGTTCCATTTTATAAATCATATCGAAGTTAATTTGGAGTCACAcaatgatatggtgtgtgtgtgtggtcctcaatgcagtttattaggctacagattaaatcatTTATGACAAATTTCACAGGATGGTGAAAGTGCATGGTGATCTTGATGCTCTTTTCTAATAAATATTGAGTGTCTTATTCTGATGAcaatgatgatcgatgcttgactgccatttgacaaaaatattctctctcttatccataataatcccaTCATGTAGGCTAGCCTACCCGCACAGCATACCCGCATTGTATCTGTACACATACTGTACCAAGGTACATATGCTATTTAACAGTTTTCGTGACAAAATTATTGGTAGAGTtcaaaatgcgatggaaacacattgaacttaagcgaaaaagtacattttgtgtgcactttCTACATTACGCGCTGATTTGTATTCTCAACAAGTTCATTTGGTAGAAAAACACCACTGATGTGAAAATGCTCATGTTTCCTtaatgccatttttttttttagatttgcatgaaaatctatctccaattggatggaaacttcTCTTATGTTACCATTTGTTTATCCTTGTAGGTTGTATCCCCTCTTGAAAATAACAGGTGTAAGACACCTAGTAAAACTAGCCCTTTGTGTCTTGTAGAACTAAACATTTGTTACTGGtagcctaaaaaaaaaaaagttttctttaacaaattatgtgactGAAATATTCTCTGCTATACAGGTACTTGATCAACAAGTAAATCATAGACTCATAGTGAGTGAGCCACACTTGTTCTTAATGTAATGGGATTACAAAACAGTAGTAATAATGACATTATATTCAGCGTATTAACTTGCTGCTGATCTCGTCCCTGAAACGGAGAGATCACTGAGTAGGCTAGCTGACTTTGATTATTCCGGGGTTGCCAAGGTAGTGACAAAGCAAAGCATGGCTGGCTTGGGCCCATAATGCTGGGCCAATGAGATGCTGTGACTAGATAACAGAGAGAACTGACGGAAGTAAAGAATAAGGCTACTAGATTGATCAACTGTTTGTTGCTGTTGTTGATGCAAGTTTTGGGGACCAGGTCTCCCTTGGAACAGAGGTATACTACAaaaaagcaggatcaatgagtaGGGTAGCTGACTTTGATTGAaaattgtatttatatatatttatattatatcgattttctggttcattaagaaaGCTAAACATAGAcatgtgtttttggttgttgagtcATTTAGACCATGCCCATTTCAAGCTTATCTTTCCAAAAAATAAGTTATTTCAGAATATGTTAGCTGgataactcattgatcctgcttgtagtattacaccccccccccccccggtctctTGCAAAGACTAACCATTAAGTAAATGAAATAAGAAAATTGAGGGGGAACGTACTGTAATATCACTGCTCTCTGCCTCTATGCTGCTGCACTGTATCGTTAGTGTTCTGCCTGCCTCTGTCATTATCAGTTGAGACGAGGCATGGGGACAAGTATATGTACATAATGGTGTGCCTATGAAACTGAAGATCTCCAAAATGTTACTGTTTTATCAGTAGAGTTGGTttgggagggtgggtgggtggaaatcattttatattttgtttgtctAGATTTATGATCACGCTTtcataaaacaaaaacaactttaATAGTTTGTGGGGGAAGggagatttatttttattttacttttccaTCACCTGAAAATATTGCATACTGCAAAGAATGCGATGGGGGGGATGAAAACAAGTGAATAATGTAAGTTTCATATCTTATATCATAAGGAACAATGGTTGAAAAAATCTAATGTTTTTACAGATTTTTTGATACAGTCTCAAATTTGTTTTATGAAAAAATATGAACAAAGTATATTAataaatatattaatatattaataAAGATGAACTACTATTTGTAAAGCCTCAAA

Function

GO: NA

KEGG:

id description
K06265 DAG1; dystroglycan 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906093 lncRNA downstream 48132 33731092 ~ 33731316 (-) True G796058
TU906091 lncRNA downstream 49227 33729882 ~ 33730221 (-) True G796056
TU906058 lncRNA downstream 66062 33713181 ~ 33713386 (-) True G796032
TU906057 lncRNA downstream 66326 33712165 ~ 33713122 (-) True G796031
TU906056 lncRNA downstream 68530 33708803 ~ 33710918 (-) True G796030
TU906298 lncRNA upstream 22001 33823500 ~ 33826292 (-) True G796245
TU906311 lncRNA upstream 42508 33844007 ~ 33849125 (-) True G796258
TU906357 lncRNA upstream 105799 33907298 ~ 33908398 (-) True G796304
TU906358 lncRNA upstream 106990 33908489 ~ 33910834 (-) True G796305
TU906830 lncRNA upstream 260882 34062381 ~ 34062646 (-) True G796749
XR_005053227.1 mRNA downstream 436603 33341851 ~ 33342845 (-) False LOC118966028
XM_036987824.1 mRNA downstream 460459 33283869 ~ 33318989 (-) False LOC110531942
XM_036987825.1 mRNA downstream 460489 33283869 ~ 33318959 (-) False LOC110531942
XM_036987823.1 mRNA downstream 460490 33283869 ~ 33318958 (-) False LOC110531942
trnap-agg-56 mRNA downstream 546027 33233350 ~ 33233421 (-) True trnap-agg-56
XM_021615487.2 mRNA upstream 138936 33940435 ~ 33999008 (-) False LOC110531948
XM_021615488.2 mRNA upstream 138936 33940435 ~ 33999008 (-) False LOC110531948
XM_021615489.2 mRNA upstream 138936 33940435 ~ 33999008 (-) False LOC110531948
XM_021615490.2 mRNA upstream 138936 33940435 ~ 33999008 (-) False LOC110531948
XM_021615491.2 mRNA upstream 138936 33940435 ~ 33999008 (-) False LOC110531948
TU904054 other downstream 1751180 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2117250 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2360475 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2375579 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3421484 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 249560 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 1068456 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1552720 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1584354 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1690527 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile