RNA id: XM_021615483.2


Basic Information

Item Value
RNA id XM_021615483.2
length 2868
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110531947
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33863184 ~ 33925784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGAATTGATGCGCACTGGTCCCAATTCCCAAGACTTGAACATATTAATTTTATGCTATTAATTATTTCCAAGGAGCTAACCTACATTAAGCTATTCAAATGCGACAATTATTGTCATTTATGACCAAGCACATTTTCCGTAATTGTAATCTTCTTCAACATGAGAGAAAGACAAATAGGGCTCCCATCAATCGAACTAACCGATTGGTTATGCGACGCGCAGCGGGGAGCGTGAGACGTGCCCAAATTCATTCATGGATCCCGTGGGATAACCATCACATTCGCCCGAAAGACAGAGCACCAGCGGAAACAGGGGTGGTTGGATAGTTGGGCAGACTGTTTTACCCAGAGTGCACTGTAGGCTACACACTGACAACTTCACCTTCGTTCGCGATCCGAAAGGGTAGTCTGTCACATTCGTTTCAAGCCGCATGCATCTCGCTCAATCGAGACGCCCGGTCTCCACGCACAGGCGGCTTGCACTCAGTCCTGTTCCATCCTTTCAGCGTGATACAGGGAGGAGAATCCGTACAAGCTCACAGTGGACTTTAATGTGTACAAAACCTCATCTTGACGACCCTGCATATTAACAGGactggggagggacagagaagagagagaaagaggaagagggagcagCAGCCTTCGTCTGACAGCGTGACCATTGGATGAGCCTCGTTCATGCGTCTCCCTGTGTGCAACTCCAACATTACTATGAACTGTGAGCAGGACTTTGGAGACGGGGGCCTGGGTGTGACCCTCACCCTCCGACTGCTCATGCACGGAAAGGAGGTTGGCAGTATCATTGGCAAGaaaggagagacggTGAAAAGAATACGGGAGGAGAGCAGTGCACGAGTCAACATTTCAGAGGGATCATGTCCAGAGAGGATCATCACCATCACCGGCTCTACAGACTGTGTCTTCAGGGCATTCACCATGATCACATACAAACTGGAAGAGgaCCTCACCACACTGGTGGCCAACGGCACCATCAGCAACAAGCCCCCAGTGACCCTACGACTGGTCATCCCAGCCAGCCAGTGTGGCTCCCTCATTGGCAAGGGAGGGGCAAAGATCAAGGAGATCAGAGAGAGCACGCGAGCACAGATACAGGTGGCAGGAGATTTGCTGCCCAACTCTACTGAGCGAGGGGTGACGATATTGGGGAGTCAGGACTCGGTAATCCAGTGTGTCAAGCTCATCTGCACTGTAATCCTGGAGgtgtttGAGGCATCAGACTTTTCCCCCCAccctctgtactctctctcccagGGTGGTCTTGACCTGCATCAGAGTGATCTCTTCCAGGCCTACTCTGTACCAAACCAATATGGCATTCCACATACAGAGTTGGCCAAGCTACATCAGCTATCCATGCAGCAGAACATGCAGCAGAGTCCCATGTGCCAGCCGACTACAACTGTTCTCCCTGGGATGGACTCAAACTCCCAGACATCGCAGGAGCTCCTTATTCCAAATGACCTGATAGGCTCGATCATCGGCCGACAGGGCACTAAGATCAATGAGATCAGGCAGGTGTCGGGGGCTCAGATAAAGATCGGCAGCCAGCTGGACGGAACCAATGACCGACACGTCACCATCACTGGCACACCAGTCAGCATCAACCTGGCTCAGTACCTCATCACCTCCTGTTTAGAGACAGCTAAATCCACGGCCCAGGCAGCCTCCATGGCCACCCCCAACATGGCTGACCTTAATATGGTCTTCACACATCCTGCTTCCCCGGCCTCCtccccccacaccgcctccactcTGGCAGCCATGGGtaccctctcccccacccccgtCATGGGCCACCCCTACGGCGCCCTACCCTTCTCCAGTCTGTTAGGGGTCAAGTCTGTCCCCTTCCTGACTCTCTCCAGCCCCGCCCCCCAGGTCGCTGTCACCGCCGCCCCTTCCCACACCTCCCTGGCAGCCTACACTACCAAAATCTCCTCGGCCAACTGCATCAAGAAACCCGACAGGCAGAAGTTTGCACCCTACTAATGCTACATACTACACGTCGCTAGCCTTCTTCTGAAGGCTGAAATTAAGGACAACTGTCTCTTATGGCTacatctcaaatgacaccctatgtcctacatagtgcactctatggtgaatagggtgccatgtgagaCTTGCCCTATGTTCTTCCAATCACGCCCTGATGTAGCCATATCTGCTGCCAGAGATTATCTTGGCTGTACTTTATAATTCACCACAAGGAAGAGACCAACAGAGATTTGGATGAAAGCTATCATAAGGTATActatacattacatatatagaTGATTTGTGAGTTCCCCATGAATTTATGGACCGCTTTCACCCCCACCTCATTCTACTGTTATTTATCACTCGTATAGAGCACAGTCCTAACTTGGGAAATGCACTAACTTGGAATTTCATGTAAATCATACACTGATGTAATGGTAAGTGTGTATGGTAAGTGTGTATCTCTCGAGTTAGGAATAGGCCCAAAAGTATTTATCCTTCAGTATAATCTGATACGGATGGCTGCTCAACTGTATGATGCTTTTATACAATGTCTGTGATTGCTTCTTGAAGTTTTTAAGAAAATCTGTAAATGTTTGGGaagaaaaatattgttttttttatgccTTTGTGCTATAGCTAGTACTGTACTGTTCAGTGTTATGTTGTTTTGTTGGGTTTTTTTAAATGTGCAACTAGTTTTTATCTTGTTTCTTtgtattgttttgtttattaaaAGTATTTGTTTCTTGAGGTAGCTGCAGGTATGCGTCTCCCTTTAATTTCTACCTTTGTCCATTAAAGGTGGAGTCTGCAACTTCTTTGTTGCCTGTGGTAACCAGAAGAAATGCTCAAACAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906092 lncRNA upstream 132025 33730931 ~ 33731160 (+) True G796057
TU906077 lncRNA upstream 137763 33725041 ~ 33725422 (+) True G796044
TU906075 lncRNA upstream 137807 33725041 ~ 33725378 (+) False G796044
TU906080 lncRNA upstream 138794 33724156 ~ 33724391 (+) True G796045
TU906071 lncRNA upstream 143202 33719766 ~ 33719983 (+) True G796041
TU906382 lncRNA downstream 21842 33947625 ~ 33949058 (+) True G796325
TU906389 lncRNA downstream 27048 33952831 ~ 33953833 (+) True G796331
TU906457 lncRNA downstream 109617 34035400 ~ 34035768 (+) True G796394
TU906507 lncRNA downstream 116653 34042436 ~ 34043094 (+) True G796441
TU906523 lncRNA downstream 136658 34062441 ~ 34062644 (+) True G796456
XM_021615472.2 mRNA upstream 177154 33549171 ~ 33686031 (+) True LOC110531945
XM_021615469.2 mRNA upstream 475219 33361262 ~ 33387966 (+) False LOC110531943
XM_021614371.2 mRNA downstream 126513 34052296 ~ 34057570 (+) False rl32
NM_001160636.2 mRNA downstream 126528 34052311 ~ 34057570 (+) True rl32
XM_021615495.2 mRNA downstream 132286 34058069 ~ 34128871 (+) False LOC110531951
XM_021615497.2 mRNA downstream 138599 34064382 ~ 34128871 (+) True LOC110531951
XR_002474782.2 mRNA downstream 355558 34281341 ~ 34298265 (+) True LOC110531954
TU904694 other upstream 1275797 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1360436 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1360830 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1738449 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 195639 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 630148 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1439205 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2387346 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3108635 37034418 ~ 37035918 (+) True G799578

Expression Profile