RNA id: XM_021615487.2



Basic Information


Item Value
RNA id XM_021615487.2
length 10036
RNA type mRNA
GC content 0.49
exon number 54
gene id LOC110531948
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33940435 ~ 33999008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catctgactgttaaacagccatcactagcacagggaggctgctgcctacatagacttgaaatcattggccacttttaataaatggatcactggtcactttaataacgccACTAAtattgtttacatatctggcattactcatctatGTATATACTGAACTTCTGGCtctgacagagatggccgcctcgcttcgcgttcctaggaaacaaTGCAGCTCTGTCAATGCTCAtgcatgtatttgtgtgtatatattcttattccattcctttgaTTTGTGTATATTAGgtaattgttagatattaatgcactgtgtttgctacactcgcaataacatcggctagccatgtgaccaatacaatttgatttgaaataacatTCTCCTGGCAGATCCCTTTtttaaatgtgtatatagacCAATAAAGAGGTTCTGTAACCATTTTTTGACAGACCCTGTAAGGAAAGCCTACCACATCTCAGTCTTGGTTCCAGTAACTGATGTAATAGCATGGACAGCTTGGTTTAGCCCAGGAGCTGAAGATTCAATTTTAAGGAAGAATGAAAACTAGGCTTCCCATGACAGTGAAAGTGCAATTAGTGATGGATGCAATTGCCATGCAGTTGCGCTCCGACAGTCAAATTACATTTGTAAATGCTTAACACATCCGTATTGACAAAACGAGTCATGTGACGACCATGAAGATGGCGCATCTTACAGTATATAGCAGTTTTCTGAAAATGTCTTGCCCCTCAATACCAGTTTGGACCGGCGGACAATATCACGAGTGTTAATTATCGTCTGACTCAACCCAATCGCGGGGACCCGATATCATGGCGTTGTTGATCATTGGGAATCCGACTTGGTAATGAACCACAGGCTAATGACTAACCTGGAAATACATAAATaaaccgtaaaaaaaaaaaaaaaaaatccgttCCTATCGAGATGCTGCTGCAACAATAGCGTTTGGAGATTTAGATGACCGTGTGTATTGGGTAGGTGGACACGGAGACTGCATCTTGTGTGACTAGGAGACACAGCGAGCAGAGCAGACCGGGAGATAAAGGAACCGCGGGCGAAGACATTGGTGGTCCATTTTATGTTGTTGCCTATAATAGCCTATATTTCTAACGAGTTGTAGCCTAGTCCCGTTCGATACACAAAGAGCCGGGGATATTCCTATAGCTTTCATTTAGCCACATCCTCCCACGATATCGACAGAATGAGGCTTGGTCTCCAGGTGGGAAAATAACAAAAATCCCAAGATGTGGATACCGACAGAAGAGGAAAAAATCGGAGTTGTTATTTGTAACTTCCGGGGCTCAGTATGTCAGGCCCTGGTTCTGGAGATAGGAGAGACGGTGCAGATCCTGGAGAAGAGTGAAGGTTGGTACAGAGGGTTTTCCACCAAGAAGCCTTCAATCAAGGGTATATTCCCAACCAACTATGTCCACCTGAAGAAATCCACAGTCACCAACAGAGGGCTGTGTGAGACGGTGGTGCCTCTGGAAGATCCCATTATCACTGAGACCACCTCCACCCTGCAGGAATGGGGCGTGCTGTGGAAGCAACTCTACGTGAAGCACAAGGTGGACCTGTTCCACAAGCTGCGTCATGTGATGAATGAGCTCATTGACCTGCGCCGGCAGCTCATCCAGGGTCACCTGGCCcaggaccagaccagagagaTCAAACGCCACATAACCGTGCGCCTGGACTGGGGCAACGAgcACCTTGGCCTGGACCTTGTTCCTAGAAAGGAGTTTGAAATGGTGGATCCGGATCATATCAGTGCATCTGAACTCTACAAAATGCATGCATCCAGCAGACACTGTGGCCAGCCAAGCACAAACCAGTGTTCGTCGTCCGATCGTTCTCAGGGCGACAGCGTGCGTCAGCGCCATGGAGATGGTTGCCGTGTTCCGGTGCAGCACCACCTCTTCATCAACCTGAAGAGTTTCACCTACAACACCATCAGCGAGGAGGCAGATGTCTTCTTCTCCCTCTACGACACCCGTGACAACAAACAGATCAGTGAGAAGTTTATGGTGAGACTGAACAAAAGTGGAGGACCAAAGAACCCAGAGAAGGTGGACCGTCTCTGTGCTCTCTTCACGgATCTGAGCAGTAAAGACCTGAAGAGAGACCTGTACATTGTAGCACATGTCATACGAACTGGTCGTATGTTGTTGAATGACTCAAAGAAGGGTCCACCCCACGTGCAGTACAGGAGACCGTACGGCTGTGCTGCTCTGGCCATGAGTGACGTGTTCCACACAATCACAGACCTCCAAGAGGAGAAGGACTTTGTGCTCAAAGTTTACACATGTAATAATGAGAACGACTGGTTTCAGATCCACGAGAACATCATCCGCAAGTCTAGTACCAAGTACTCAGCTCCTAGCACCAACTATGgCCTCATCATCTCTCTACAGCTGCTGCGGGGGGAGATGGATCAGATCAGGAGGGAGAATCATGCTGTGTTCAGCAGGTCCCTCGCCATCATGCGCAAACTCGGCTTCTCTGATGTCATCATGCCAGGTGACACTCGTAATGACCTGTACCTGACCCTGGAGCGTGGGGACTTTGAGAGGGGGGgcaagagtgtccagaaaaacaTTGAGGTCACTGTCTATGTGCTTTACGCTGATGGGGACACACTCAAGGACTGTATCAGTCTGGGTAGTGGGGAGCCAAACACAAGTGAGCACCGGTCCTTTGTCCTCTACCACAACAACAGCCCTCGCTGGAGTGAGATGATCAAACTACCCATCCCCATAGACCGCTTCAGAGGATCACACCTGCGCTTCGAGTTCAGACACTGCTCCACTAAAGACAAAGGGGAGAAGAAGCTGTTTGGTTTTTCCTTCACTCCTTTGATGAGGGAGGATGGGACCACGCTATCAGATGAGAGCCATGAGCTCTATGTCTATAAGTGTGATGAGAATACAACGTTCAGTAACCAGGGCCTGTACCTGAGCATGCCCTGCTGTAAGGAGGACTTCAACAGCTGCCCCAACCTGCCCTCCACCCTGCCCTTCCAGAGGAACCCCAAGGAGACCTTCTGGGTCTCCACACAGCTTTGCTCCACCAAGCTCACCCAGAACGTGGACCTCCTGGCCCTACTGAACTGGAAAGCCCACACTGACCGGGTGTTGGACATCCTGGGCAGACTACGCCACATCAATGGAGAGGAGATTGTCAAGTTCCTACGAGATGTCCTGGATACACTGTTTTGTCTCCTGGATGACAACACCGATAAATACGGACCACTGGTTTTCCAGTCATTGGTGTTTATCATCAACCTTCTCAGGGACAGTCGTTTCTACCACTTCCGGCCTGTTATGGAGGCCTACATACAGAACCACTTTGCAGGAGCTCTGGCCTACAAAGAGCTAATCCGCTGTCTGAAGTGGTACATGGACCGCTCTGCTGAGGTTGTCAGACAGGACCACATCCAAGAGGCCATGAAGGCTTTGGAGTACCTGTTTAAGTTCATTGTCCAGTCTCGGATCCTGTACTCGCGGGCGACCTGTGGTATGGAGGAGGACCAGTTCAGAGCCAGCATCCAGGAACTCTTCCAGTCCATCCGCTTTGTGTTGAGTCTGGACAGCCGCAGCTCTGAGACCCTCGTCTTCACACAGGCGGCGTTGTTGAACAGTTTCCCAGACATTTTTGACGAGCTGCTGCAGATGTTCACAGTGCAGGAGGTGGCTGAGTACGTCCGGGGCACGCTGGGGAGCATGCCCAGTACGGTGGACATCGGCCAGTCTATGGACGTGGTCAAACTGCAGTCCATCGCCCGCACCGTCGAGAGCAGGCTCTTCTTCTTCCCTGagTCTCGTAGTATCTTGCTGCCGGTGGTCCTGCATCACATCCACCTGCACCTACGCCAGCAGAGGGAGCTGCTGATCTGCTCAGGAATCCTCACCAGCATCTTCTCCATCATCAAGACCAGCTCTATGgAGTCTTCTGTGCAGGAGGAGGTAGAGATGATGGTGGAGAGCCTGTTGGATGTTCTGCTCCAGACTCTGTTGTCCATCATGTCCAAGTCTCAGTCTCTGGAGACAGCTAGGGGGCAGCGCTGTCCCCAGTGCACCGCTGAGATCACGGGGGAGTATGTGTCCACTCTGCTGTCTCTACTCAGACAGATGTCAGAGATCCACTTCCACCACCTGCTCAACAACTTCCACAGCAAAGAGGAACTCAAGGAGTTCCTGTTGAAGATCTTCTGCGTGTTCCGGAACCTGATGAAGCTCACCATCTTCCCCCGAGACTGGAGTGTCATGAGGCTACTGACCAGTCATGTCATTGTGGCGACAACACAGTACCTGTCTCCAGCGTTACACAAGAACTTCTCAGAGGCGGATTTTGACTTCAAGGTGTGGAATTCCTTCTTCAGCCTGACGGTCCTGTACATCAACCAGCCCAGTCTGCAGTTGGAGCCCTTGACCCAGGCCAAGAGGAAGAAAGTCCTGGACAAGTATGGAGATATGAGGGTGATGATGGCCTATGAGCTCTTCAGCATGTGGCAGAAGCTTGGTGAGAATAAGCCTCACTTTATCCCTGGAATGATGGGTCCGTTCCTGGGAGTGACGCTGGTGCCTCAGAGCGAAGTCCGGAATATCATGATCCCCATCTTCCATGACATGATGGACTGGGAGCAGAGGAAGAACGGCAACTTTAAGCTGGTGGAAGCAGAGTTGATGGACAAGCTGGAGAGTATGGTGGCTGATGGGAAAGGGGACGGCAATCACAGAGAGCTCTTTGGCCTGCTGACCCAGTTGTTTGGGCCTTACCCCAGCCTACTGGAAAAAATTGAGCaggaaacatggagagagacaggcattTCGTTTGTCACCTCCGTCACGAGACTGATGGAGCGCTTGCTAGactacagGGACTGTATGaaaggagatgagatggagaACAAGAAAATGGGTGGTTCTTCCAACCTCATGAACTTCTACAAATCAGAGATCAACAAGGAGGACATGTACATACGCTACATCCACAAGCTGTGTGACCTGCACCTGCATGCAGAGGACTACACGGAGGCTGCATTTACCTTGCTGCTGTACTGGGAGCTGCTGCACTGGGAGGACCGACCCCTCAGAGAGTTCCTCCACTACCCCACACAGAGCGAGTGGCAACGCAAAGAGGGCCTCAGCCGCAAAGTGCTCCACTACTTTAACAAGGGAAAGTGTTGGGAATATGGAATATCACTCTGCCGGGAACTGGCTTTCCAGTATGAAACCTTATATGACTACCAGAGCCTGAGCTGGATACGGaAAATGGAGGCTGCGTACTATGACAACATCATAGAACAGCAGAGGATTGAACCAGAGTTCTTTAGGATGGGCTTCTATGGCAGGAAGTTTCCTTTTTTCCTCAGGAATAAGGAGTTTGTTTGCCGGGGATATAACTATGAACGACTGGAGGACTTTCAGCAAAGGATGCTGGGAGAATTCCCACATGCCATTGCCATGCAGCACCCCAACCAACCAGATGAGGCCCTCCTACAAAGTGATGTTCAGTACCTGCAGATCTATGCGGTTACCCCAGTGTCAGACATCACTGACGTGCCTCAGCTGGAGCGCGTACCCGAGAGGATCAAGAGCTTCTACCGCATTAACAATGTCACTCGCTTTCACTATGACAGACCCTTCCACAAGGGACCCAAGGACAGGGAGAATGAGTtcaggAGCCTGTGGATCGAGAGAACCACCCTGATTCTGTCTCGTCCTCTCCCTGGCATCTCCCGCTGGgctgaggtggagaggagagaactgttggAGGTGAGCCCTCTGGAGAATGCCATCTACGTGGTGGAGAATAAGACCCAGGAGCTGCGGACCCTGATTAGCCAGTACCAGAACAGACAGCACCATGGCAACATTAACCCCCTCAGCATGCTGCTCAACGGGGTCATAGACGCTGCCGTCAATGGGGGCATTGCCAGATACCAGGAGGCGTTCTTTGAAAAGGACTACATGAACAGCCACACAGAGGACACAGAGAAGATCACTCAGCTCAAAGACTTGATGCAGGAACAGGTTCACATCCTTGGAGTGGGGCTGGCCGTCCATGAGAAGTTGGTGCACCCAGAAATGCGTCCCCTGCACAAAAAGCTGATAGATCAGTTCCACATGATGAGGACTGGTTTACATCAGTGTTTATATGTGGCCCAGCAGGGGTTGCCAGCAGCCAGCACTGGAGTCAACAATCCCAGAGGCATCCTGACCACTCACAGCCACATGAGCCCAGAAAGTGTCCGTCTGATTCACAGACACAGCCCTATGAACCTGCAGGGTTCTATCCgtcagtcctcctcctctctctcttctcacaccTCCAGCGAGGCAGGAGGAAACCTGGTCATCCTGACAGACGGCCTATTGGGAGAGCACCCTGAGGACACGGCTCACATGGAGccaagcccctcctcctccagtctgAGCTCCATTCGGTCCACCTCCTCCCAGGTTATTAACTCTGCCCCATCTAGTGCCAGAGgCTCTCCGTCCCTGCCGGATAAAGCCAAACACAACCGGGAGGTGATGATGCTGCTGCCGCCTCaccagagagtcaacaacaccatGTACTACACCATGACTGAGAACGGACAGAGCAACCATCAGCAACGTGCCTTACTCCAGCAAGTGAACCCCTGTAAGCCGTGTGTTGACCCTCCCACGAGCTTGCCAGAGAAAGTGTTCCCTAGTGGCCCGAGCAGCTGGAGTCTAGATGGCGAGGGCAGGGAGACATTGCCCTACATCCAGGGACCTACAGGGGGCATCATCATGCCCCCTGTCCCACCCAGGTCCTTCCCACCAGGCCACTTCCTGATGCACTTTGATGCGTTCCACCACCAGAACAGTGACCCACCCCCGGCACTGCCTGTTCGCTCTCTCAGAAAGtctcctctccaccccatacCTGGCTCCCCCACTAGTCCTCAGTCAGCCCTGGGGGGCAGTAATTCCACCCTCTCGGGCAGTGCCAGCAGCGGGGTCTCCTCTCTGAGTGAGAGTAACTTTGGGGCCCAGTACCCCGATGCCCAAACTGTGCGGAATGACGCCATGGAGCCCTTACCCAGCCACCTGTGGACCCCTGATGAGTACCTGGCCTCTCCCTATCTGCACATCCACTACAGTGGGCCAGAACCAGAGTCCCTCGACCATGTCCGACCCTTTCACTACCGTAACCCTGTCTCACACCTCCCCCAATCCCAAACTCACTTCCACCCCCACTCTCACCACCAACCGGCCATCCTTGACGGCCACCCTCATCCCCACGGGCCCACCCACCACCAGGTACCCCTCCACGGCCCACACCACATTCCTTACCGgcgccctcagcccccagctgtgcccccCAAGCCCTACCTGAGGGAAGGGTGCATCCCTGAGGAGGACCTGAGCTCCCTGGTGCCCCAGCCCATCCCCCTTCCTCGGAGGATCTTCCACTCCCCCCATAGTCACAGAGAGGAGCTAGCCAAGGCTGCCTGGGAGCAGTGCATCAGCGAGGAGCACGAGGAGACACCATGAGGAGACTACAGGGCTGGGCCTCTTGGTACATCTTACTAGTCTAAAGTGGCTCCCTTCCTGTTGTCTCCTTACCATCATCTGAATTGATGTGAAAGAACATGGGCTGGTGAATCATGCAAATACATTGTAGGCATTAACAATATTGCTGTCATCCATCCCATGTTTTTATATCAGAGCAGATGAAGGggagaggaagccactttagactattgagTTACACCTTCACTCTCCCCAGTGTATTCAGTCTGATTCTGAATGGATGAAGCAGCATCATAGGAATTAATAAGGGAATAGTATCTGTTGGACAATATGACCGATAATAATCACTTTGTTTAAATAGATGTTGACTGTACACTGTTGTACAACTAGTCTGTGAGCATGTTTATTTTCATTTGAGAACATTATACAGCCGTTTTGTGAAACATGACGATCCTCATCAACATGATCAACCCATACGATCCCCAAATAGAATCCCCCCTCCCTTTTCCACAACGAAAGGCAACTGCACAAAGTTATACACTTAGTAAAGTCATGATGACTTTTCTGCTTTTAATACTCCATATATCTATCCTATTATTTTGATACACTTGCTACAGTATGTATGGGGTTTTTAAATGGACTTTTCATCCTCTGATTTACAAAACGCTGTATAGTGCTtcaccatatgacattctccaatcttctgttctattctgctacCTGCTTCTCATTGAAAGCAGGTCTGTTATTTGGACCTGGGTCACTCTTCTTGACCAAAGCCTCTAGGGACATATAAACCTCAGTTTAGGATTATCCCTCCATACAGTACGTATGGAAAACAATGTGAATGTATTCAAACAAGATGTGCTGTTTTGTATGACACAAGTGGCAGGTCTTCTTTTCTGTTCATGTGAAGTTGTCTTTATTACAGTCTTCTTGCCTTTTGTGTAACAGACCGAAATATCTCATGAGAGGAGCGTGAATGTGACCCAGACTGAAAGAGCTGATAAATCCTTGGGAGGACTATGAGGGAGGGGTGGGATTGTCCGGTGCCACAGAGAGCTCTGGAACAACAGCGAGTTCCCAATGTCAGTTGCACAGGTTGAGTTGGATTCCATAAGACTGGATTGTTCCTTGAAAGGAGATAGTGATGGAGAAAATGAACCATGGTGAAAACATCCTTAACCCTCAACTAGGAGTAAGATGAGAAGTAGCGAAGAATAATGCCTCAACAGTACCTCAACCACCTACTGGACTAACTATACTCGTAAAAACAATTATCACACCTTATCACAcatcactctctgcctctctatgtTTCAAGACCATGTCAATTAACAAGTAATACATATGGACTGTGTGTAAAAGGACTAAAGGCAATGACATTGCTCCTGTCAGTTACCTGTTCTACTCACCGTCACCCCCCTCTGCCCACCGAATGGCAAATCCAAACTCCCTCAAACAGTGTTCTAAAACAACTACCTGCCTTAAGTGCACTGAAATGCAGTATCAGTCTCTCATTCTGACACCTCACTTGACTGTTTCTGTAAAGCTCATGAAATGACAGCTCTCATTTTTTCATCACGTTCTCTACGTTTTCCGAACAAACCTCATGATATCTATGTGTGGCATCTGTTTTGTCCTGCCTTGGTTTGTAGAGCTACAGTATACTTAGTTTTTGCCTGCAGTTTCTCTTCACTCTGATCTGCAATAGAGAGATGTTTGTGTGTACAGAGGAGGAGTATGAGAAGCTCAGACAGGACCATGAGGTTGACCTCCTTGGGCAATGAAAGTACAACAGACAGTGTTTGCTGAGATGTAATGTATAACCAACCAGTGGGTTGGAAAAAAAATTCCCTGTGTAGTTTTTTTGCAGGTGAATGCTTTGCTTTGTGTTCTTGCACATTAGGTTGTCCACTGATCAGACAACATCTATTTTTGTATGCAGGTACATCCAGTTGTGAGGACATAGTTCACCGATGTGATGAAGGATGCAGGGTATGTTTTGCAGACTGTGGAATTAGTATGGAAGAACAGAACTATGGATCAAATATAAGATGAAAGTCAGATGTATGGGGAGGCTGATGTTTGTGTGAAGAGGAGCGATACTCAGATCAAATATAGGTACAATAGAATTTTTCAATGTAAATTCTGTTACTGTACATACAGCGGTATTGTGAAATATTTTTGAAAATTATTGCAGACCCCCCTAAAATAATTTTATTGTTGTTTCGTGTAAATACATGTACTCCAGAAATCGATGTAATTGATGAATATCTATAATCGATGTTTAAAGAAGACAAATACATTAGACTGTGGTTGTCTGCATTGTTCTTGACTTCAAGTCTTcaaatataaatactttatacACTTTTCAATGTGCTTTCTTGTACAGATGGTGTTAGCATGATCAAACAGTGTTTGGTTGTAAAGGTGGTTTTCCTACTCCCATAACTGCTGTGGTATGGATTCATTAACAATGCCAAACATTAAAGACAATCTTTTATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU906358 lncRNA downstream 29601 33908489 ~ 33910834 (-) True G796305
TU906357 lncRNA downstream 32037 33907298 ~ 33908398 (-) True G796304
TU906311 lncRNA downstream 91310 33844007 ~ 33849125 (-) True G796258
TU906298 lncRNA downstream 114143 33823500 ~ 33826292 (-) True G796245
TU906093 lncRNA downstream 209119 33731092 ~ 33731316 (-) True G796058
TU906830 lncRNA upstream 63373 34062381 ~ 34062646 (-) True G796749
TU906832 lncRNA upstream 65477 34064485 ~ 34064730 (-) True G796751
TU906833 lncRNA upstream 65757 34064765 ~ 34065000 (-) True G796752
TU906848 lncRNA upstream 78599 34077607 ~ 34077811 (-) True G796762
TU906864 lncRNA upstream 98281 34097289 ~ 34097523 (-) True G796777
XM_036987831.1 mRNA downstream 138936 33779448 ~ 33801499 (-) True LOC110531946
XM_021615481.2 mRNA downstream 138956 33779448 ~ 33801479 (-) False LOC110531946
XM_021615475.2 mRNA downstream 138959 33779448 ~ 33801476 (-) False LOC110531946
XM_021615476.2 mRNA downstream 138959 33779448 ~ 33801476 (-) False LOC110531946
XM_021615477.2 mRNA downstream 138959 33779448 ~ 33801476 (-) False LOC110531946
XM_021615494.2 mRNA upstream 7944 34006952 ~ 34032689 (-) False LOC110531949
XM_036987838.1 mRNA upstream 7944 34006952 ~ 34033504 (-) False LOC110531949
XM_036987839.1 mRNA upstream 7944 34006952 ~ 34034242 (-) False LOC110531949
XM_021615492.2 mRNA upstream 7944 34006952 ~ 34034489 (-) False LOC110531949
XM_021615493.2 mRNA upstream 7944 34006952 ~ 34034490 (-) True LOC110531949
TU904054 other downstream 1912167 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2278237 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2521462 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2536566 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3582471 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 52051 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 870947 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1355211 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1386845 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1493018 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile