RNA id: XM_036987839.1


Basic Information

Item Value
RNA id XM_036987839.1
length 5163
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110531949
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34006952 ~ 34034490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGTAGCTAGCTCGAGTGCACACAACGCAGACAGCTGTTTCTGGTGCGGAACAACAACACTGAACTGATTGTAGCTCTTACACAGCGCCAGACCATGGCGTCGGCATCTGCTAGTGTGGATTCCAAGGCAGAGCTGACCTCTCTGCTGGAGCAGTGGGAGAGGGAGCAGCAGGCCAGCACACCGGACCTGGTCAACATCCTGACTAAGATTTCAGAGCTGGtggagagggagactgaggaaTATCACAAAGCTGATCCGGATCCTTTTGATGACAGGCACCCTGGGAGAGCGGATCCGGAATGCGTCTTGGGTCAGCTGCTAAAGATCCTGTTCAAAAATGATGACTTCATGAATGCTCTCGTTAATAGCTATGTGATGACCAGTAGAGAGCTCACCCTCAACACTGCAGCTTGTCGCCTGCTGCAGAATATCATGCCTGGGTTGGAGACTGCTGTGGTCTTTCAGGAGAAGGAGGGCATAGTGGAGAGGCTTTTTAAATGGGCCCAGGAGGCGGAGCAGCCCCTGAGAATCTATGCTACAGGCCTGTTGGCTGGAGCAATGGAGAACCAGGACATCGCTGCCAACTACAGGGAGGAGAACTCTGTCGTGGTGCCTCTGATGCTGCAGCGGCTACGCGAGCTGCAGGCCAAGGACACTGAAAACCGGAAGGGGTTTAAACGGCCCGGTCCCAGGAAGAGCCTGGGGGAATCTCTCCTTCCTCTGGATGAGGAGACGGTCGACGGGGGCTTCGAGGACAACCCTTTCCCCACGGGGAATGAAGGCATTGAGAGGAATGAGAAGGGATCAGATGAGGACCGAGTGGAGATCCACAGCCATGAGTCTTACAGCGAGATCTCCTTCCACCTCAACTACCTTAACCACACCTACAAGACCAGTAGCTGCGCTAACTCCGCTGTCAAAGGACTGATGAAGCCTGTGTCTGCCCCGCCGCCTCTGTCCCACCGGGACTTCCCCGACGGCAGGGAGGAGGGCAGCACTCACCtcaagaggagaacagagagggagaatggacGGAAGGTGAAACAGAAACTGAACTTCTCCCTGCCAGACCCGGAGAGGAACTTCAGCGAGCTGTCCAACAGCAGCTGGTCTGAGATGAGCCCCTGGGTGATTGGGAACAACTATCACCTTTACCCTCTGACCCCAGAGATGGAGCAGAGACTCATCCTACAGTACCTCACCCCTCTGGGAGAGTACCAGGAGCTTCTGGCTGTCTTCATGCAGATGGGAGCCTGTGAGCTGCTCATCCATTACATGGACCTGAAGCAGACCAATGATGTACAGCTCACCTTTGAGGCTCTCAAGTACCTAGCCTCCCTGCTCCTGCATAAGAAGTTTGCCGCCCAGTTTGTGGTCCATGGAGGGGTTCAGAAGCTGCTGGAAATCCCCAAGCCTTCCATGGCCGCCACAGGGGTGTCTCTGTGCCTCTACTACCTGGCCTACAACCAGGATGCCATGGAGAGGGTGTGTATGCTGCCCCACTCTATCCTGTCTGACGTGGTGAGCTACAGTCTGTGGCTGTTGGAGTGTTCCCACGCCTCGGGCTGCTGCCACGccaccatgttcttctccatctctttctccttccgAGCAGTGCTGGAACTCTTCGACAGGCAGGACGGCCTCCGGCGCATGGTCAACCTGATCAGCACATTGGAGATCCTGAACCCTGAGGACCAGGGTGCCCTGCTGAGTGATGACCAGATCTTCTCCAGCAGGCAGACGGCCAAGCACACCTGCATGGCCCTGCGCAGGTACTCCGAGGCCCATCTGGCCATCAAGGTGGAGCAGGTCAAGCAGTCCCTGCAGCGGACTGAAGGGGGCGCTCCCATTCACCCACAGCCTTACTACAAGGCATGTAGTTACACCCACGAGCAGGTGGTGGAGATGATGGAGTTCCTGATTGAGTACGGCCCAGTCAGGCTGTACTGGGAGCCTGCAGAAGTTTTCCATAAGCTCTCCTGTGTGCAGCTTCTCCTGCAGCTCATCTCCATTGCCTGTGACTGGAGGACCTACTACGGCAGGAGTGACACAGTGCGTTATGCCCTGGACATACTGAGCATCCTGACGGTGGTCCCTAAGACCCAGCTGCTGATGTCGGAGTCTGTGGCCGTGCTGGATGGGGAGGGGGGCAACGCCATCTCCACCGTGGGTATGGGTGTAGTCCTGGTGGTGGCAGAGGGAGAGGTGTTTGTGAACGATGCCGAGATTCAGAAGTCTGCTCTGCAGGTGGTCATCAACTGTGTGTGCGCTCCAGATAAACGCATTTCCGGCATCGGCAAGTTCATCTCTGGCACGCCCCTCAGACGTCTACCCCAGACCACCAAGAACAGCGAGAGCGTGCTCACCAAGATGTGGAATGTGGTGCAGTCCAACAATGGCATCAAGGTACTGCTGTCCCTGCTGACGGTGAAGATGCCCATCACAGATGCGGATCAGATTCGGACCCTGGCCTGTAAGGCCCTGGTGGGTCTGTCCCGCTCCAGCTCAGTTAGACAGATTATCAGCAAGCTGCCGCTCTTCAGCAGTGGACACATCCAGCAGCTCATGAAGGAGCCCGTGCTCCAGGACAAACGCAGCGAACACGTCAAGTTCTGCAAGTTTGCGGCTGAGCTAATCAAGCGGGTGTCTGGTAAACCCCTCATGATCGGGACGGATGTTTCCCTGGCCTGGCTGCAGAGGGCAAATGTGGTGGCCCAGTCCAGAATATCCTTTCCTGAGAAGGAGCTACTGCTGTTGATCCGGAACCACCTGGTGGTCAAGGGTCTGCATGACACTGCCACCACACTCACCAAGGAGGCCGACCTCCCCATGGCCATCCTTCCCCACCCATCTTCCTCAGCTTTGCTTCCTGTCGTTGTTCCCCCTGCTTCTCCTGCCCCTGCCCTCCCCCGGACCCCTCGGCTGGCCAATGGGGTCACAGCACGGTTGGTGAGCCACAGCTCTCATCCGTCCGTGCCGTTGTCAGTTCAGCCTCGTCCCTCGACGTCGCAACTCCTCATGGTACCTCCGGCCGCCCCTCCCCTGTTGACCCCTCACCAAAGCAACGGCTCTCCCCTGATTGGGCGGATCGTGTTCATGCGAGAGCGCCCGTCGCTGTGCCCCGTGCCTGCCATCTGTAAGAAGCCGCGGGTGCTGAGGCAGAAGTCAGACTACGGTGCCTTCAGCCAGAGTCCAGCCATGAAGAAACAGCTGGACAGACACCTGCCCTCTCCTCCCGCCCTGGACAGCATCATCACAGAGTACCTGAGGGAGCAGCACGCGCGCTGCAAGAACCCCGTTACCACCtgcccccccttctccctcttcacCCCCCACCAGTGCCCTGAGCCCAAGCAGAGGCGCCAGGCCCCAACCAACTTCACCTCCCGACACACACGCAGGGTTGTCTACCCAAAATACGGAGGGGTGGATGGCGGCTGCTTCGACCGACACCTCATCTTTAGCAGgtTCCGACCCATCTCTGTGTTCAGGGAAGCAGACGAGGATGAGAGTGGGTTCATGTGTTGTGCCTTCTCTGCCCGTGAGCGGTTCCTGATGCTGGGGACATGTACTGGCCAACTCAAACTCTACAATGTGTTCACAGGCCAGGAGGAGGCCAGCTATAGCTGCCACAGCTCTGCCATCACACACCTAGAGCCATCACGGGATGGCTCTCTGTTGTTGACGTCAGCATCATGGAGTTATCCTCTGTCTGCACTGTGGGGCATGAAGTCAGTGTTCATCATGAAGCATTCCTTCTTAGATGACCATTATGTGGAGTTCAGTAAACTTTCACAAGACCGAGTCATTGGCACAAAGGAACACATAGCTCACATCTACGACATCCAGACAGGGCAGAAGACCCTCACCCTCCACTACCCGGACCTGTCCAACAACTACAAGAGGAACTGTGCAACCTTTAACCCCACCGACGACCTGGTGTTGAACGACGGCGTGCTGTGGGATGTGCGCTCAGCTCAGGCCATCCACAAGTTTGACAAGTTCAACATGAACATCAGCGGAGTGTTCCACCCCAACGGCCTGGAGCTCATTGTCAACACTGAGATTTGGGACCTGCGGACCTTCCACCTGCTCCACACAGTGCCAGCTCTGGACCAGTGCAGGATTGTCTTCAACAACAACGGCACGGTCATCTACGGAGCGATGCTACAGGCAGATAATGATGATGATCTATTGGAAATGCAGATGAAGACTCCCTTTGGCTCCTCCTTCAGGACGTTCAACGCCACTGACTACAAACCCATTGCCACCATCGACGTGAAGAGGAATATATTTGACCTCTGCACGGATACTAAGGACTGCTACCTGGCTGTGATCGAGAACCAAGACTCTGTCAACACAGACACGGTGTGCAGACTGTACGAGGTGGGACGCCAGAGActggctgaggaggaggaggatgaggaagatcaGGAGGATGACGATCAAgaggatgacgatgatgatgaagatgactcTGACGACGACATCGAcacagacccactggttgccgAGCTGGAAAATGAAAATGGAGGAGAGGACGAGGAAGATGGGAACAATGAATTCTCTCCCTCTGACGATGAAGAGGTAGCTCGTCTGCTTGAGGGGGATGATGACGATGACTCGGATGAGGAAGATGGGGACCTTGCCCTGGATAACACAGACAGCTCAGACCTTGaggatgacataatcctgtcCCTGAATGAGTGAGGAGTTGTCTGGGACCGAGAAACTAGGACAACATGTCCGGACATCTAGTGAGAGCTCTCCCGTGGGTGAACACTCATTAACAACTGAGACAAGACGGTAAGGTACAGTTGGATAGAGTtggagagaaagaaggatgggATTTGGGAAATGAACTGCGAGAGCCGACAGCACTGCGAGTTTGGAATATTGTCCCAATGCCCACCTACCGCCCAGGAGCAATAGTGGGAGAAGCTGATTGGAGAGTCCGAAGTAGAGGTTCAGAAGAAAGTTCCGCCTTTCAAAAAGTTTCCACGGAAATGGTATTCCTGAAAAAAAACCTGAAGATTTGTTTATGATATAGTTTTATATTACACAGTTTGCTTGATGAGTGGGGAAAAAAACTGGTACACACAACAGACTGAttcttttaaaatgttgatttcaTTAAAGCTCTTTTCAAAGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906358 lncRNA downstream 96118 33908489 ~ 33910834 (-) True G796305
TU906357 lncRNA downstream 98554 33907298 ~ 33908398 (-) True G796304
TU906311 lncRNA downstream 157827 33844007 ~ 33849125 (-) True G796258
TU906298 lncRNA downstream 180660 33823500 ~ 33826292 (-) True G796245
TU906093 lncRNA downstream 275636 33731092 ~ 33731316 (-) True G796058
TU906830 lncRNA upstream 28139 34062381 ~ 34062646 (-) True G796749
TU906832 lncRNA upstream 30243 34064485 ~ 34064730 (-) True G796751
TU906833 lncRNA upstream 30523 34064765 ~ 34065000 (-) True G796752
TU906848 lncRNA upstream 43365 34077607 ~ 34077811 (-) True G796762
TU906864 lncRNA upstream 63047 34097289 ~ 34097523 (-) True G796777
XM_021615489.2 mRNA downstream 7944 33940435 ~ 33999008 (-) False LOC110531948
XM_036987842.1 mRNA upstream 99328 34133570 ~ 34163160 (-) False LOC110531953
XM_021615500.2 mRNA upstream 99328 34133570 ~ 34163176 (-) True LOC110531953
XM_021614394.2 mRNA upstream 325736 34359978 ~ 34361763 (-) False LOC110531153
XM_036987858.1 mRNA upstream 327928 34362170 ~ 34377148 (-) False LOC110531957
XM_036987855.1 mRNA upstream 327928 34362170 ~ 34383316 (-) False LOC110531957
TU904054 other downstream 1978684 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2344754 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2587979 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2603083 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3648988 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 16817 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 835713 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1319977 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1351611 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1457784 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile