RNA id: XM_021615497.2


Basic Information

Item Value
RNA id XM_021615497.2
length 4031
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110531951
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34058069 ~ 34128871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcgcgtgtgtgagagaaagtgtgtgtgatgCAGGGGGTGTGACCGTGTCATGTGTGGGGAGAGTGTTTGACTGCTTCATCACACCCCTCTggtatagagagggagggagagcaaccTTCTCCGACACACTCACTGAGGCTGTGTGTAAtggttgctgtgtgtgtgagctggTATGTGAGCGTGAACGAGGGGTATGATTATTCCTATGGAATAGGAAGAGCAACCATGAATACCTCAAAAGGAACCTCAGAATGGTGGGAAGAAAAGGAGAGATGACTATTCCTTTGATGCTTTGATCATTTTGTTTCCCTGCTTTCAGTTTGTTGTGGGAATTACTTATTttagcaatatatatatatattttttttaccaagtTTAAACAGTTGaaggacatagaaatagacatctATGGAATAGGATTTTTCATGCAATAAGTGAAGTCAAGATATGCTTCAAGTAGAACAGAGATATGAAGAGAAGAACATTGCTTTTTGTCCTGCTTGTTAGCGAGTGAGACTGGGTCACAGAGGACACCGTATTCCCAGGGGCACCTCGCTGGGTCTGCTGGCCACTACAACAGAATAGCGACTTTTCTCTCAGGTCGGATGTTTTGACAGGACTGCAGCCATGCTTTGTGGTCTGAGGAGAGAGGCGAAGAACAGCAGCATCGATGATGGGCCATACTCTAAGGGCAGCAAGGACTCTGGAGGGACCGACCATGCCCTTACCTCCAGGAGACGCAGTATTAAAGAGGACTACTGGGGCATGACCACGTTGGACCTGATTAAAAGGGAAGGCAGCAGCCTGGGCCTCACCATCTCCGGGGGGTCCGATAAGGACGGCAAGCCCAGAGTGTCAAACCTGCGGCCAGGTGGGCTAGCTGCCAGGAGTGACCAGCTGAATGTGGGAGACTACATCAAGTCAGTGAACGGCATCAACCTGTCCAAGCTCCGCCACGATGAGATCATCAGCCTGCTGAAGAACATAGGAGAGCGTGTGGTTCTGGAAGTGGATTACGAACTACCTCCTTTTGtCCAGAACACTCCCACAAGTGTTATAGCTAAGACTATAGAGGTGTGCCTATACAAGGAGGGCAACAGCTTTGGATTCGTCATGAGAGGAGGGTTCCATGAAGACTGGCACAGGTCTCGTCCTCTGGTAGTGACCTACGTACGGCATGGGGGTCCAGCTGATCGAGAGGGCACACTGAAGGCTGGTGACCGTGTGCTGAGCATAGGCGGGAAGCCCTTACACCGAGAGAAGCATGCTGACGCTCTGACTATGCTGATGCAGTGTAGCCAGGAAGCCCTGTTCCTGATTGAGTATGATGTCTCCCTCATGGAGTCAGTGCAGCAGGCCTCTGGCCCCCTACTGGTGGAGATAGTGAAGTGTCCTGCAGCCAGCCTGGGTGTTAGCCTAGCTACTGCTGTGTACAGGAACAAACAGGTCATCGTCATCGACAAGATCAAACAAGCCAGTGTGGTGGAAAGgTGTGGGGCATTGCATATAGGTGATCTCATTCTGTCTATAGACGGGACCAGCACTGAGCACCTTTCCCTGATGGAGGCCACGCAGCTATTGGCCCAAACCTCTGACATTGTCAAATTGGAGATCCTTCCAGCCAATCAGAGCAGACTTCCCATGAGACACCAAGACACAGTGAAAGTACAGAAAAGCAACCTTCAACACTGGGAGCCCACTGCCAACTACAGCCACACCCAGCACTGCAAGACATGGAGCAGTCCCAGCCACCAGCTCAACCAGCAGGACCACTGCAAATCTCTGGTGTGTGGTGGCTTCTCCCCTTCCTCCACAGCCACCTCAGGGTACAGCAGCACCCTGCCCTGCCCCATCCCCCCCGTCGCCCCCCCAAGCCCCCACAGCACGACACACAAGAGATGCCAGCGGAGTAAGGAGCACAAGAGCTCACTGTCCCTAGCATCCAGCTCAGTGGGCCCTGGGGGTCAGGTTGTTCACGTGGAGACCAGCGAGGTCGTCCTGAGGGGGGATCCACTCCTAGGGTTTGGGGTTCAACTGCAGGGGGGTGTTTTTGCCACAGAGACCCTGTCTGCCCCCCCAGTCATCCGCTTCATCGAGCCCGACAGCCCTGCCGAAAGATGTGGACTTCTGCAGGTGGGGGACAGACTCCTGTTAATCAACAGAATCCCTACAGAGGATGGAACACTGGAGGAAGCCAAACAACTACTGCGAAATGCCGCTCTGGCCAATAAGGTCACTCTGGAGGTCGAGTTTGATGTAGCAGAATCAGTGGTTCCAAGTAGTGGCATGTTCCATGTGAAGCTGCCCAAGAGGAGGGGAGTAGATCTTGGCATCACAATCAGTGCAAGCAAGAGACCCGAAAAAGCTCTCATCATCTCTGACATCAGAAAAGGAAGCATAGCTCACAGGACAGGCACGTTGGAGCCAGGGGACAGGCTGCTGGCTATCGACAACGTGCGTCTGGAGAACTGCACCATGGAGGACGCCATGCATGTGCTGCAGCAGGCAGAGGACATGGTCAAGCTCCGGATCCAGAAGGACGAGGATAACGCTGaTGAGCTGGAGATGTCTGGTTCCATTATCTACACAGTGGAGCTGAAGCGTTTCAACGGCCCGCTGGGTATTACCATCTCAGGCACAGAGGAGCCTTTTGACCCTATCGTCATCTCaggcctcacaaagaagggcctGGCTGAAAGGACTGGTGCCATCCATATAGGGGACCGTGTCCTGGCCATCAACTGTGTGAGTCTGAAGGGGAAACCCCTGAGTGAGGCCATCCATCTACTCCAAATGGCCGGAGAGACTGTCACCCTTAAGATCAAGAAACGCCAAGACGAATCGGATGGGCAGCAGATGTCGGAGCAGGCAGGATTCCCGAGCGACACAGAGGATGAGCTGATTGACTACCAGAAGACCAGTAAACACTCAGGGGTGTACTCTGCCACCGGGCCCAGCGTGTACTCTGCCATGAGCTCCTGGGACGGTTCCGGCATCGACACTGGCTACGGCAGCCAAGGAACGTATCTCCACAGAGGTGCAGATTTGACCTTCCAGCCTAACGAGTGGAGACGCACCAAACCGACCAGGACTCACCTCACCTCCACTGGCCTTACCGCCCTTACCCACCACTCCCAACTCTACGATGGGAGATACGATGAGGATGACTGGGATAAGGCTGCTGGATACGCCAGTCCCCCTTGTTGCCATGGCACCCTGAACCAGGAGGACACCTTCTGGTCCCAGGCCCTGCAGGACCTAGAGACCTGCGGCCAATCAGAGATACTCAGGGAGCTGGAGGCGTCCATGACAGGCAGCACTCTTAGCCTGTATCTGGCGTCCCAGGAAGTGCTAAAGAGCAGAATCAGTCCTGTGAAGAGGGGTCCCATCCATGACGAGCCTAAAACCAAAGGCAACCTGCAGAGGTCCAACAGGACCAGGGACACACCccccagagggagaggagagacccaGGAGACCACTTCCCCTACAGCCCTGGAACTGCTGAAGGTGACCCTGAGGAAGGACCCAGACTGTGGAGACTTTGGCTTCAGTGTATCAGATGGCTTCCTAGAGAAAGGCATCTACGTCAACATGATCCGACCAGATGGTCCTGCCAACCAGGCCGGGTTGAAACCCTATGACCGCATTCTGCAGGTGAACAGAGCGAGGACCAGAGACTTTGACTGCTTCCTGACTGTTTCTCTCATCACTGAAGCAGGAGACAGCTTGGACCTGGTCATCAGCAGAAACTCCCTGGCACAGGCAGATAAGGGGCCACCTCAGGACTGCGAGGACCCTTCTGACTCCCTGTTAAGCTTCCTACATTATAGGACCAATAGTATCGCCCTGTGACAAAGGTCCAAGGGGGAGGTAATGGATAATAGCACGTTCAAATGGTGTTACACATTATACCATGTGACATGTAGGCACTGCACGTCTCACACACTGGTTTTGTTTTGTTATATCTCTTGTACATACACACAGAATCACATTCAGATGTGAGAATACATGTGTATGTGAATAAACA

Function

GO: NA

KEGG:

id description
K20251 GRIP; glutamate receptor-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906523 lncRNA upstream 1738 34062441 ~ 34062644 (+) True G796456
TU906507 lncRNA upstream 21288 34042436 ~ 34043094 (+) True G796441
TU906457 lncRNA upstream 28614 34035400 ~ 34035768 (+) True G796394
TU906389 lncRNA upstream 110549 33952831 ~ 33953833 (+) True G796331
TU906382 lncRNA upstream 115324 33947625 ~ 33949058 (+) True G796325
TU906585 lncRNA downstream 51298 34180169 ~ 34180461 (+) True G796517
TU906627 lncRNA downstream 172617 34301488 ~ 34301885 (+) True G796558
TU906671 lncRNA downstream 193717 34322588 ~ 34323051 (+) True G796601
TU906674 lncRNA downstream 197233 34326104 ~ 34326407 (+) True G796604
TU906687 lncRNA downstream 213835 34342706 ~ 34342932 (+) True G796617
XM_021614371.2 mRNA upstream 6812 34052296 ~ 34057570 (+) False rl32
NM_001160636.2 mRNA upstream 6812 34052311 ~ 34057570 (+) True rl32
XM_021615485.2 mRNA upstream 138599 33863185 ~ 33925783 (+) False LOC110531947
XR_002474782.2 mRNA downstream 152470 34281341 ~ 34298265 (+) True LOC110531954
XM_021615501.1 mRNA downstream 215484 34344355 ~ 34349297 (+) True LOC110531955
XR_005053228.1 mRNA downstream 257013 34385884 ~ 34392962 (+) True LOC118966029
XM_036989281.1 mRNA downstream 481419 34610290 ~ 34612491 (+) True LOC110531960
XM_021615507.2 mRNA downstream 514048 34642919 ~ 34682784 (+) True LOC110531961
TU904694 other upstream 1476994 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1561633 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1562027 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1939646 32122682 ~ 32124736 (+) False zgc:112271
TU907166 other downstream 427060 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1236117 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2184258 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2905547 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 3438374 37567245 ~ 37570411 (+) True G799858

Expression Profile